JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MYSM1_chr1_58649743_58705062	0/0	a0010	828	1	1	0	0	0	0	copy fasta	MYSM1	chr1	58649743	58705062
MYT1L_chr2_1784113_2336275	1/1	a0001	1186	100	46	2	30	4	16	copy fasta	MYT1L	chr2	1784113	2336275
MYT1L_chr2_1784113_2336275	0/0	a0002	1184	2	2	0	0	0	0	copy fasta	MYT1L	chr2	1784113	2336275
MYT1L_chr2_1784113_2336275	0/0	a0003	1186	2	0	0	2	0	0	copy fasta	MYT1L	chr2	1784113	2336275
MYT1_chr20_64159452_64247253	0/1	a0001	1121	213	75	50	44	12	31	copy fasta	MYT1	chr20	64159452	64247253
MYT1_chr20_64159452_64247253	0/0	a0002	1121	4	4	0	0	0	0	copy fasta	MYT1	chr20	64159452	64247253
MYT1_chr20_64159452_64247253	0/0	a0003	1120	2	1	0	0	0	1	copy fasta	MYT1	chr20	64159452	64247253
MYT1_chr20_64159452_64247253	0/0	a0004	1121	2	0	2	0	0	0	copy fasta	MYT1	chr20	64159452	64247253
MYT1_chr20_64159452_64247253	0/0	a0005	1121	1	0	0	1	0	0	copy fasta	MYT1	chr20	64159452	64247253
MYT1_chr20_64159452_64247253	0/0	a0006	1121	1	0	0	1	0	0	copy fasta	MYT1	chr20	64159452	64247253
MYZAP_chr15_57586904_57690364	1/1	a0001	466	254	70	62	84	14	22	copy fasta	MYZAP	chr15	57586904	57690364
MYZAP_chr15_57586904_57690364	0/0	a0002	466	91	20	5	59	0	7	copy fasta	MYZAP	chr15	57586904	57690364
MYZAP_chr15_57586904_57690364	0/0	a0003	466	3	2	0	0	0	1	copy fasta	MYZAP	chr15	57586904	57690364
MYZAP_chr15_57586904_57690364	0/0	a0004	466	1	1	0	0	0	0	copy fasta	MYZAP	chr15	57586904	57690364
MYZAP_chr15_57586904_57690364	0/0	a0005	466	1	0	0	1	0	0	copy fasta	MYZAP	chr15	57586904	57690364
MYZAP_chr15_57586904_57690364	0/0	a0006	466	1	0	1	0	0	0	copy fasta	MYZAP	chr15	57586904	57690364
MYZAP_chr15_57586904_57690364	0/0	a0007	466	1	1	0	0	0	0	copy fasta	MYZAP	chr15	57586904	57690364
MZB1_chr5_139382467_139394913	1/1	a0001	189	353	85	64	150	14	38	copy fasta	MZB1	chr5	139382467	139394913
MZB1_chr5_139382467_139394913	0/0	a0002	189	1	1	0	0	0	0	copy fasta	MZB1	chr5	139382467	139394913
MZF1_chr19_58556932_58578335	1/0	a0001	734	152	17	24	89	6	15	copy fasta	MZF1	chr19	58556932	58578335
MZF1_chr19_58556932_58578335	0/1	a0002	734	89	7	18	50	7	6	copy fasta	MZF1	chr19	58556932	58578335
MZF1_chr19_58556932_58578335	0/0	a0003	734	88	52	16	10	1	9	copy fasta	MZF1	chr19	58556932	58578335
MZF1_chr19_58556932_58578335	0/0	a0004	734	43	1	12	24	2	4	copy fasta	MZF1	chr19	58556932	58578335
MZF1_chr19_58556932_58578335	0/0	a0005	734	8	0	0	8	0	0	copy fasta	MZF1	chr19	58556932	58578335
MZF1_chr19_58556932_58578335	0/0	a0006	734	5	0	0	5	0	0	copy fasta	MZF1	chr19	58556932	58578335
MZF1_chr19_58556932_58578335	0/0	a0007	734	5	0	0	4	0	1	copy fasta	MZF1	chr19	58556932	58578335
MZF1_chr19_58556932_58578335	0/0	a0008	734	4	3	1	0	0	0	copy fasta	MZF1	chr19	58556932	58578335
MZF1_chr19_58556932_58578335	0/0	a0009	734	3	3	0	0	0	0	copy fasta	MZF1	chr19	58556932	58578335
MZF1_chr19_58556932_58578335	0/0	a0010	734	2	2	0	0	0	0	copy fasta	MZF1	chr19	58556932	58578335
MZF1_chr19_58556932_58578335	0/0	a0011	734	2	0	0	0	0	2	copy fasta	MZF1	chr19	58556932	58578335
MZF1_chr19_58556932_58578335	0/0	a0012	734	2	2	0	0	0	0	copy fasta	MZF1	chr19	58556932	58578335
MZF1_chr19_58556932_58578335	0/0	a0013	734	1	1	0	0	0	0	copy fasta	MZF1	chr19	58556932	58578335
MZF1_chr19_58556932_58578335	0/0	a0014	734	1	0	1	0	0	0	copy fasta	MZF1	chr19	58556932	58578335
MZF1_chr19_58556932_58578335	0/0	a0015	734	1	1	0	0	0	0	copy fasta	MZF1	chr19	58556932	58578335
MZF1_chr19_58556932_58578335	0/0	a0016	734	1	0	0	1	0	0	copy fasta	MZF1	chr19	58556932	58578335
MZF1_chr19_58556932_58578335	0/0	a0017	734	1	0	1	0	0	0	copy fasta	MZF1	chr19	58556932	58578335
MZF1_chr19_58556932_58578335	0/0	a0018	734	1	0	0	1	0	0	copy fasta	MZF1	chr19	58556932	58578335
MZF1_chr19_58556932_58578335	0/0	a0019	734	1	0	1	0	0	0	copy fasta	MZF1	chr19	58556932	58578335
MZF1_chr19_58556932_58578335	0/0	a0020	734	1	0	0	0	0	1	copy fasta	MZF1	chr19	58556932	58578335
MZF1_chr19_58556932_58578335	0/0	a0021	734	1	0	0	1	0	0	copy fasta	MZF1	chr19	58556932	58578335
MZF1_chr19_58556932_58578335	0/0	a0022	734	1	0	0	1	0	0	copy fasta	MZF1	chr19	58556932	58578335
MZF1_chr19_58556932_58578335	0/0	a0023	734	1	1	0	0	0	0	copy fasta	MZF1	chr19	58556932	58578335
MZT1_chr13_72703367_72732629	0/1	a0001	82	333	56	65	155	13	43	copy fasta	MZT1	chr13	72703367	72732629
MZT1_chr13_72703367_72732629	1/0	a0002	82	51	40	1	5	1	3	copy fasta	MZT1	chr13	72703367	72732629
MZT2A_chr2_131478960_131497397	1/1	a0001	158	343	57	68	156	14	46	copy fasta	MZT2A	chr2	131478960	131497397
MZT2A_chr2_131478960_131497397	0/0	a0002	32	34	23	7	0	0	4	copy fasta	MZT2A	chr2	131478960	131497397
MZT2A_chr2_131478960_131497397	0/0	a0003	158	12	11	1	0	0	0	copy fasta	MZT2A	chr2	131478960	131497397
MZT2A_chr2_131478960_131497397	0/0	a0004	158	1	1	0	0	0	0	copy fasta	MZT2A	chr2	131478960	131497397
MZT2B_chr2_130177262_130195727	1/1	a0001	158	398	95	74	161	18	48	copy fasta	MZT2B	chr2	130177262	130195727
MZT2B_chr2_130177262_130195727	0/0	a0002	158	4	0	0	4	0	0	copy fasta	MZT2B	chr2	130177262	130195727