JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NAE1_chr16_66797878_66835976	0/0	a0005	534	1	0	0	1	0	0	copy fasta	NAE1	chr16	66797878	66835976
NAE1_chr16_66797878_66835976	0/0	a0006	534	1	1	0	0	0	0	copy fasta	NAE1	chr16	66797878	66835976
NAF1_chr4_163123669_163171890	0/0	a0001	494	247	52	58	92	13	32	copy fasta	NAF1	chr4	163123669	163171890
NAF1_chr4_163123669_163171890	1/1	a0002	494	79	14	16	37	3	7	copy fasta	NAF1	chr4	163123669	163171890
NAF1_chr4_163123669_163171890	0/0	a0003	494	7	6	1	0	0	0	copy fasta	NAF1	chr4	163123669	163171890
NAF1_chr4_163123669_163171890	0/0	a0004	494	2	0	2	0	0	0	copy fasta	NAF1	chr4	163123669	163171890
NAF1_chr4_163123669_163171890	0/0	a0005	494	2	2	0	0	0	0	copy fasta	NAF1	chr4	163123669	163171890
NAF1_chr4_163123669_163171890	0/0	a0006	494	1	1	0	0	0	0	copy fasta	NAF1	chr4	163123669	163171890
NAF1_chr4_163123669_163171890	0/0	a0007	494	1	1	0	0	0	0	copy fasta	NAF1	chr4	163123669	163171890
NAF1_chr4_163123669_163171890	0/0	a0008	494	1	0	1	0	0	0	copy fasta	NAF1	chr4	163123669	163171890
NAF1_chr4_163123669_163171890	0/0	a0009	494	1	0	0	1	0	0	copy fasta	NAF1	chr4	163123669	163171890
NAF1_chr4_163123669_163171890	0/0	a0010	494	1	0	0	0	0	1	copy fasta	NAF1	chr4	163123669	163171890
NAF1_chr4_163123669_163171890	0/0	a0011	494	1	1	0	0	0	0	copy fasta	NAF1	chr4	163123669	163171890
NAF1_chr4_163123669_163171890	0/0	a0012	494	1	1	0	0	0	0	copy fasta	NAF1	chr4	163123669	163171890
NAGA_chr22_42053334_42075812	1/1	a0001	411	411	90	78	183	15	43	copy fasta	NAGA	chr22	42053334	42075812
NAGA_chr22_42053334_42075812	0/0	a0002	411	1	0	0	0	1	0	copy fasta	NAGA	chr22	42053334	42075812
NAGA_chr22_42053334_42075812	0/0	a0003	411	1	0	0	1	0	0	copy fasta	NAGA	chr22	42053334	42075812
NAGA_chr22_42053334_42075812	0/0	a0004	411	1	0	0	1	0	0	copy fasta	NAGA	chr22	42053334	42075812
NAGA_chr22_42053334_42075812	0/0	a0005	411	1	0	1	0	0	0	copy fasta	NAGA	chr22	42053334	42075812
NAGA_chr22_42053334_42075812	0/0	a0006	411	1	0	0	0	0	1	copy fasta	NAGA	chr22	42053334	42075812
NAGA_chr22_42053334_42075812	0/0	a0007	411	1	0	0	1	0	0	copy fasta	NAGA	chr22	42053334	42075812
NAGA_chr22_42053334_42075812	0/0	a0008	411	1	0	1	0	0	0	copy fasta	NAGA	chr22	42053334	42075812
NAGK_chr2_71063648_71084808	1/1	a0001	344	429	98	82	186	16	45	copy fasta	NAGK	chr2	71063648	71084808
NAGK_chr2_71063648_71084808	0/0	a0002	344	4	0	0	4	0	0	copy fasta	NAGK	chr2	71063648	71084808
NAGK_chr2_71063648_71084808	0/0	a0003	344	2	0	0	0	0	2	copy fasta	NAGK	chr2	71063648	71084808
NAGK_chr2_71063648_71084808	0/0	a0004	344	2	0	0	2	0	0	copy fasta	NAGK	chr2	71063648	71084808
NAGK_chr2_71063648_71084808	0/0	a0005	344	1	0	1	0	0	0	copy fasta	NAGK	chr2	71063648	71084808
NAGK_chr2_71063648_71084808	0/0	a0006	344	1	0	0	1	0	0	copy fasta	NAGK	chr2	71063648	71084808
NAGK_chr2_71063648_71084808	0/0	a0007	344	1	0	0	0	0	1	copy fasta	NAGK	chr2	71063648	71084808
NAGK_chr2_71063648_71084808	0/0	a0008	344	1	0	1	0	0	0	copy fasta	NAGK	chr2	71063648	71084808
NAGK_chr2_71063648_71084808	0/0	a0009	344	1	0	0	1	0	0	copy fasta	NAGK	chr2	71063648	71084808
NAGLU_chr17_42531241_42549449	0/1	a0001	743	361	49	68	186	15	42	copy fasta	NAGLU	chr17	42531241	42549449
NAGLU_chr17_42531241_42549449	1/0	a0002	743	44	37	5	0	1	0	copy fasta	NAGLU	chr17	42531241	42549449
NAGLU_chr17_42531241_42549449	0/0	a0003	743	13	12	1	0	0	0	copy fasta	NAGLU	chr17	42531241	42549449
NAGLU_chr17_42531241_42549449	0/0	a0004	743	1	0	0	1	0	0	copy fasta	NAGLU	chr17	42531241	42549449
NAGLU_chr17_42531241_42549449	0/0	a0005	743	1	0	0	1	0	0	copy fasta	NAGLU	chr17	42531241	42549449
NAGLU_chr17_42531241_42549449	0/0	a0006	743	1	0	0	0	0	1	copy fasta	NAGLU	chr17	42531241	42549449
NAGLU_chr17_42531241_42549449	0/0	a0007	743	1	0	0	0	0	1	copy fasta	NAGLU	chr17	42531241	42549449
NAGPA_chr16_5019844_5038935	1/1	a0001	515	339	76	56	157	9	39	copy fasta	NAGPA	chr16	5019844	5038935
NAGPA_chr16_5019844_5038935	0/0	a0002	515	90	11	20	44	5	10	copy fasta	NAGPA	chr16	5019844	5038935
NAGPA_chr16_5019844_5038935	0/0	a0003	515	6	6	0	0	0	0	copy fasta	NAGPA	chr16	5019844	5038935
NAGPA_chr16_5019844_5038935	0/0	a0004	515	1	0	0	0	0	1	copy fasta	NAGPA	chr16	5019844	5038935
NAGPA_chr16_5019844_5038935	0/0	a0005	515	1	0	1	0	0	0	copy fasta	NAGPA	chr16	5019844	5038935
NAGPA_chr16_5019844_5038935	0/0	a0006	515	1	0	1	0	0	0	copy fasta	NAGPA	chr16	5019844	5038935
NAGPA_chr16_5019844_5038935	0/0	a0007	515	1	0	0	1	0	0	copy fasta	NAGPA	chr16	5019844	5038935
NAGPA_chr16_5019844_5038935	0/0	a0008	515	1	0	0	1	0	0	copy fasta	NAGPA	chr16	5019844	5038935
NAGPA_chr16_5019844_5038935	0/0	a0009	515	1	0	0	1	0	0	copy fasta	NAGPA	chr16	5019844	5038935
NAGPA_chr16_5019844_5038935	0/0	a0010	515	1	1	0	0	0	0	copy fasta	NAGPA	chr16	5019844	5038935
NAGS_chr17_43999622_44014068	1/1	a0001	534	365	84	74	155	12	38	copy fasta	NAGS	chr17	43999622	44014068
NAGS_chr17_43999622_44014068	0/0	a0002	534	5	5	0	0	0	0	copy fasta	NAGS	chr17	43999622	44014068