JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NAPSA_chr19_50353477_50370639	0/0	a0008	420	2	0	0	2	0	0	copy fasta	NAPSA	chr19	50353477	50370639
NAPSA_chr19_50353477_50370639	0/0	a0009	420	2	2	0	0	0	0	copy fasta	NAPSA	chr19	50353477	50370639
NAPSA_chr19_50353477_50370639	0/0	a0010	420	1	0	0	1	0	0	copy fasta	NAPSA	chr19	50353477	50370639
NAPSA_chr19_50353477_50370639	0/0	a0011	420	1	1	0	0	0	0	copy fasta	NAPSA	chr19	50353477	50370639
NAPSA_chr19_50353477_50370639	0/0	a0012	420	1	1	0	0	0	0	copy fasta	NAPSA	chr19	50353477	50370639
NAPSA_chr19_50353477_50370639	0/0	a0013	420	1	0	0	0	0	1	copy fasta	NAPSA	chr19	50353477	50370639
NAPSA_chr19_50353477_50370639	0/0	a0014	436	1	0	1	0	0	0	copy fasta	NAPSA	chr19	50353477	50370639
NAPSA_chr19_50353477_50370639	0/0	a0015	420	1	1	0	0	0	0	copy fasta	NAPSA	chr19	50353477	50370639
NARF_chr17_82453741_82495537	1/1	a0001	456	350	93	72	128	13	42	copy fasta	NARF	chr17	82453741	82495537
NARF_chr17_82453741_82495537	0/0	a0002	456	1	0	0	0	1	0	copy fasta	NARF	chr17	82453741	82495537
NARF_chr17_82453741_82495537	0/0	a0003	359	1	0	0	1	0	0	copy fasta	NARF	chr17	82453741	82495537
NARF_chr17_82453741_82495537	0/0	a0004	456	1	0	0	1	0	0	copy fasta	NARF	chr17	82453741	82495537
NARF_chr17_82453741_82495537	0/0	a0005	456	1	1	0	0	0	0	copy fasta	NARF	chr17	82453741	82495537
NARF_chr17_82453741_82495537	0/0	a0006	456	1	0	0	1	0	0	copy fasta	NARF	chr17	82453741	82495537
NARF_chr17_82453741_82495537	0/0	a0007	456	1	0	0	1	0	0	copy fasta	NARF	chr17	82453741	82495537
NARS1_chr18_57595656_57626836	1/1	a0001	548	419	94	80	181	16	46	copy fasta	NARS1	chr18	57595656	57626836
NARS1_chr18_57595656_57626836	0/0	a0002	548	1	0	0	1	0	0	copy fasta	NARS1	chr18	57595656	57626836
NARS2_chr11_78430968_78579864	0/1	a0001	477	186	70	26	68	2	19	copy fasta	NARS2	chr11	78430968	78579864
NARS2_chr11_78430968_78579864	1/0	a0002	477	106	20	22	56	2	5	copy fasta	NARS2	chr11	78430968	78579864
NARS2_chr11_78430968_78579864	0/0	a0003	477	1	1	0	0	0	0	copy fasta	NARS2	chr11	78430968	78579864
NARS2_chr11_78430968_78579864	0/0	a0004	477	1	1	0	0	0	0	copy fasta	NARS2	chr11	78430968	78579864
NASP_chr1_45579041_45623893	1/1	a0001	788	281	66	67	108	8	30	copy fasta	NASP	chr1	45579041	45623893
NASP_chr1_45579041_45623893	0/0	a0002	788	12	0	0	12	0	0	copy fasta	NASP	chr1	45579041	45623893
NASP_chr1_45579041_45623893	0/0	a0003	788	2	2	0	0	0	0	copy fasta	NASP	chr1	45579041	45623893
NASP_chr1_45579041_45623893	0/0	a0004	788	1	0	1	0	0	0	copy fasta	NASP	chr1	45579041	45623893
NASP_chr1_45579041_45623893	0/0	a0005	788	1	1	0	0	0	0	copy fasta	NASP	chr1	45579041	45623893
NASP_chr1_45579041_45623893	0/0	a0006	788	1	0	0	1	0	0	copy fasta	NASP	chr1	45579041	45623893
NASP_chr1_45579041_45623893	0/0	a0007	788	1	0	0	1	0	0	copy fasta	NASP	chr1	45579041	45623893
NASP_chr1_45579041_45623893	0/0	a0008	788	1	1	0	0	0	0	copy fasta	NASP	chr1	45579041	45623893
NAT10_chr11_34100629_34151908	0/1	a0001	1025	240	81	45	75	8	30	copy fasta	NAT10	chr11	34100629	34151908
NAT10_chr11_34100629_34151908	0/0	a0002	1025	4	0	0	4	0	0	copy fasta	NAT10	chr11	34100629	34151908
NAT10_chr11_34100629_34151908	0/0	a0003	1025	3	3	0	0	0	0	copy fasta	NAT10	chr11	34100629	34151908
NAT10_chr11_34100629_34151908	0/0	a0004	1025	3	3	0	0	0	0	copy fasta	NAT10	chr11	34100629	34151908
NAT10_chr11_34100629_34151908	0/0	a0005	1025	2	0	0	0	0	2	copy fasta	NAT10	chr11	34100629	34151908
NAT10_chr11_34100629_34151908	0/0	a0006	1025	2	0	1	0	0	1	copy fasta	NAT10	chr11	34100629	34151908
NAT10_chr11_34100629_34151908	1/0	a0007	1025	2	1	0	0	0	0	copy fasta	NAT10	chr11	34100629	34151908
NAT10_chr11_34100629_34151908	0/0	a0008	58	1	0	0	1	0	0	copy fasta	NAT10	chr11	34100629	34151908
NAT10_chr11_34100629_34151908	0/0	a0009	1025	1	0	0	0	0	1	copy fasta	NAT10	chr11	34100629	34151908
NAT10_chr11_34100629_34151908	0/0	a0010	1025	1	0	0	1	0	0	copy fasta	NAT10	chr11	34100629	34151908
NAT10_chr11_34100629_34151908	0/0	a0011	1025	1	0	0	1	0	0	copy fasta	NAT10	chr11	34100629	34151908
NAT10_chr11_34100629_34151908	0/0	a0012	1025	1	1	0	0	0	0	copy fasta	NAT10	chr11	34100629	34151908
NAT10_chr11_34100629_34151908	0/0	a0013	1025	1	1	0	0	0	0	copy fasta	NAT10	chr11	34100629	34151908
NAT14_chr19_55480188_55492566	1/1	a0001	206	386	96	60	182	12	34	copy fasta	NAT14	chr19	55480188	55492566
NAT14_chr19_55480188_55492566	0/0	a0002	206	29	3	10	0	6	10	copy fasta	NAT14	chr19	55480188	55492566
NAT14_chr19_55480188_55492566	0/0	a0003	206	3	0	2	0	0	1	copy fasta	NAT14	chr19	55480188	55492566
NAT14_chr19_55480188_55492566	0/0	a0004	195	1	1	0	0	0	0	copy fasta	NAT14	chr19	55480188	55492566
NAT14_chr19_55480188_55492566	0/0	a0005	206	1	0	0	0	0	1	copy fasta	NAT14	chr19	55480188	55492566
NAT16_chr7_101165496_101185293	1/1	a0001	369	329	66	67	144	15	35	copy fasta	NAT16	chr7	101165496	101185293
NAT16_chr7_101165496_101185293	0/0	a0002	369	88	23	6	43	3	13	copy fasta	NAT16	chr7	101165496	101185293
NAT16_chr7_101165496_101185293	0/0	a0003	369	2	1	1	0	0	0	copy fasta	NAT16	chr7	101165496	101185293