JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NAT16_chr7_101165496_101185293	0/0	a0004	369	1	0	0	1	0	0	copy fasta	NAT16	chr7	101165496	101185293
NAT16_chr7_101165496_101185293	0/0	a0005	369	1	0	0	1	0	0	copy fasta	NAT16	chr7	101165496	101185293
NAT16_chr7_101165496_101185293	0/0	a0006	360	1	0	0	1	0	0	copy fasta	NAT16	chr7	101165496	101185293
NAT1_chr8_18205109_18228689	1/1	a0001	290	475	96	83	230	17	47	copy fasta	NAT1	chr8	18205109	18228689
NAT1_chr8_18205109_18228689	0/0	a0002	290	3	0	1	1	1	0	copy fasta	NAT1	chr8	18205109	18228689
NAT1_chr8_18205109_18228689	0/0	a0003	186	2	2	0	0	0	0	copy fasta	NAT1	chr8	18205109	18228689
NAT1_chr8_18205109_18228689	0/0	a0004	290	1	0	0	1	0	0	copy fasta	NAT1	chr8	18205109	18228689
NAT1_chr8_18205109_18228689	0/0	a0005	290	1	0	0	0	0	1	copy fasta	NAT1	chr8	18205109	18228689
NAT2_chr8_18386282_18406218	0/0	a0001	290	173	25	26	105	3	14	copy fasta	NAT2	chr8	18386282	18406218
NAT2_chr8_18386282_18406218	0/0	a0002	290	95	17	14	47	4	13	copy fasta	NAT2	chr8	18386282	18406218
NAT2_chr8_18386282_18406218	0/1	a0003	290	78	26	25	4	9	13	copy fasta	NAT2	chr8	18386282	18406218
NAT2_chr8_18386282_18406218	0/0	a0004	290	32	3	4	25	0	0	copy fasta	NAT2	chr8	18386282	18406218
NAT2_chr8_18386282_18406218	0/0	a0005	290	9	8	1	0	0	0	copy fasta	NAT2	chr8	18386282	18406218
NAT2_chr8_18386282_18406218	1/0	a0006	290	7	6	0	0	0	0	copy fasta	NAT2	chr8	18386282	18406218
NAT2_chr8_18386282_18406218	0/0	a0007	290	4	2	2	0	0	0	copy fasta	NAT2	chr8	18386282	18406218
NAT2_chr8_18386282_18406218	0/0	a0008	290	2	2	0	0	0	0	copy fasta	NAT2	chr8	18386282	18406218
NAT2_chr8_18386282_18406218	0/0	a0009	290	2	2	0	0	0	0	copy fasta	NAT2	chr8	18386282	18406218
NAT2_chr8_18386282_18406218	0/0	a0010	290	1	1	0	0	0	0	copy fasta	NAT2	chr8	18386282	18406218
NAT2_chr8_18386282_18406218	0/0	a0011	290	1	1	0	0	0	0	copy fasta	NAT2	chr8	18386282	18406218
NAT2_chr8_18386282_18406218	0/0	a0012	290	1	0	0	1	0	0	copy fasta	NAT2	chr8	18386282	18406218
NAT2_chr8_18386282_18406218	0/0	a0013	290	1	1	0	0	0	0	copy fasta	NAT2	chr8	18386282	18406218
NAT2_chr8_18386282_18406218	0/0	a0014	290	1	0	0	1	0	0	copy fasta	NAT2	chr8	18386282	18406218
NAT2_chr8_18386282_18406218	0/0	a0015	290	1	0	0	1	0	0	copy fasta	NAT2	chr8	18386282	18406218
NAT8L_chr4_2054327_2074089	1/1	a0001	302	363	88	68	161	12	32	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	a0002	104	14	2	6	6	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	a0003	302	1	0	0	1	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8_chr2_73635723_73647422	1/1	a0001	227	270	41	36	149	9	33	copy fasta	NAT8	chr2	73635723	73647422
NAT8_chr2_73635723_73647422	0/0	a0002	227	74	37	20	2	3	12	copy fasta	NAT8	chr2	73635723	73647422
NAT8_chr2_73635723_73647422	0/0	a0003	227	16	0	0	16	0	0	copy fasta	NAT8	chr2	73635723	73647422
NAT8_chr2_73635723_73647422	0/0	a0004	227	11	10	1	0	0	0	copy fasta	NAT8	chr2	73635723	73647422
NAT8_chr2_73635723_73647422	0/0	a0005	227	11	2	6	3	0	0	copy fasta	NAT8	chr2	73635723	73647422
NAT8_chr2_73635723_73647422	0/0	a0006	227	6	4	2	0	0	0	copy fasta	NAT8	chr2	73635723	73647422
NAT8_chr2_73635723_73647422	0/0	a0007	227	3	0	0	3	0	0	copy fasta	NAT8	chr2	73635723	73647422
NAT8_chr2_73635723_73647422	0/0	a0008	227	1	1	0	0	0	0	copy fasta	NAT8	chr2	73635723	73647422
NAT8_chr2_73635723_73647422	0/0	a0009	227	1	0	1	0	0	0	copy fasta	NAT8	chr2	73635723	73647422
NAT8_chr2_73635723_73647422	0/0	a0010	227	1	1	0	0	0	0	copy fasta	NAT8	chr2	73635723	73647422
NAT8_chr2_73635723_73647422	0/0	a0011	227	1	0	0	0	0	1	copy fasta	NAT8	chr2	73635723	73647422
NAT8_chr2_73635723_73647422	0/0	a0012	15	1	0	0	1	0	0	copy fasta	NAT8	chr2	73635723	73647422
NAT9_chr17_74765529_74781345	0/0	a0000	0	1	0	0	0	1	0	copy fasta	NAT9	chr17	74765529	74781345
NAT9_chr17_74765529_74781345	1/0	a0001	207	313	57	54	141	15	45	copy fasta	NAT9	chr17	74765529	74781345
NAT9_chr17_74765529_74781345	0/1	a0002	207	66	30	21	11	0	3	copy fasta	NAT9	chr17	74765529	74781345
NAT9_chr17_74765529_74781345	0/0	a0003	207	3	3	0	0	0	0	copy fasta	NAT9	chr17	74765529	74781345
NAT9_chr17_74765529_74781345	0/0	a0004	51	1	0	0	1	0	0	copy fasta	NAT9	chr17	74765529	74781345
NAT9_chr17_74765529_74781345	0/0	a0005	207	1	0	1	0	0	0	copy fasta	NAT9	chr17	74765529	74781345
NAT9_chr17_74765529_74781345	0/0	a0006	207	1	0	0	1	0	0	copy fasta	NAT9	chr17	74765529	74781345
NATD1_chr17_21233870_21258410	1/1	a0001	113	410	91	74	180	16	47	copy fasta	NATD1	chr17	21233870	21258410
NATD1_chr17_21233870_21258410	0/0	a0002	113	12	1	10	0	0	1	copy fasta	NATD1	chr17	21233870	21258410
NAV1_chr1_201534127_201831969	1/1	a0001	2164	138	37	30	39	8	22	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	a0002	2164	25	2	6	14	0	3	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	a0003	2164	12	12	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969