JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NCK2_chr2_105739912_105899272	0/0	a0002	380	3	0	0	3	0	0	copy fasta	NCK2	chr2	105739912	105899272
NCK2_chr2_105739912_105899272	0/0	a0003	380	1	0	0	1	0	0	copy fasta	NCK2	chr2	105739912	105899272
NCK2_chr2_105739912_105899272	0/0	a0004	380	1	0	0	1	0	0	copy fasta	NCK2	chr2	105739912	105899272
NCK2_chr2_105739912_105899272	0/1	a0005	380	1	0	0	0	0	0	copy fasta	NCK2	chr2	105739912	105899272
NCKAP1L_chr12_54492752_54553243	1/1	a0001	1127	312	91	61	116	13	29	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	a0002	1127	29	6	6	13	0	4	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	a0003	1127	1	0	1	0	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	a0004	1127	1	1	0	0	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	a0005	1127	1	0	0	1	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	a0006	1127	1	0	0	0	1	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	a0007	1127	1	0	0	0	0	1	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	a0008	1127	1	0	0	1	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	a0009	1127	1	1	0	0	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	a0010	1127	1	0	0	1	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	a0011	1127	1	1	0	0	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1_chr2_182904115_183043457	1/1	a0001	1128	217	82	29	78	4	22	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	a0002	1128	1	0	1	0	0	0	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP5L_chr12_49786152_49833413	1/1	a0001	1334	233	68	45	80	14	24	copy fasta	NCKAP5L	chr12	49786152	49833413
NCKAP5L_chr12_49786152_49833413	0/0	a0002	1334	97	1	15	74	0	7	copy fasta	NCKAP5L	chr12	49786152	49833413
NCKAP5L_chr12_49786152_49833413	0/0	a0003	1334	15	10	3	0	0	2	copy fasta	NCKAP5L	chr12	49786152	49833413
NCKAP5L_chr12_49786152_49833413	0/0	a0004	1334	10	10	0	0	0	0	copy fasta	NCKAP5L	chr12	49786152	49833413
NCKAP5L_chr12_49786152_49833413	0/0	a0005	1334	1	0	0	1	0	0	copy fasta	NCKAP5L	chr12	49786152	49833413
NCKAP5L_chr12_49786152_49833413	0/0	a0006	1334	1	0	0	0	0	1	copy fasta	NCKAP5L	chr12	49786152	49833413
NCKAP5L_chr12_49786152_49833413	0/0	a0007	1334	1	0	0	0	0	1	copy fasta	NCKAP5L	chr12	49786152	49833413
NCKAP5L_chr12_49786152_49833413	0/0	a0008	1334	1	1	0	0	0	0	copy fasta	NCKAP5L	chr12	49786152	49833413
NCKAP5L_chr12_49786152_49833413	0/0	a0009	1334	1	0	1	0	0	0	copy fasta	NCKAP5L	chr12	49786152	49833413
NCKAP5L_chr12_49786152_49833413	0/0	a0010	1334	1	1	0	0	0	0	copy fasta	NCKAP5L	chr12	49786152	49833413
NCKAP5L_chr12_49786152_49833413	0/0	a0011	1334	1	1	0	0	0	0	copy fasta	NCKAP5L	chr12	49786152	49833413
NCKAP5L_chr12_49786152_49833413	0/0	a0012	1334	1	0	0	0	0	1	copy fasta	NCKAP5L	chr12	49786152	49833413
NCKAP5L_chr12_49786152_49833413	0/0	a0013	1334	1	0	1	0	0	0	copy fasta	NCKAP5L	chr12	49786152	49833413
NCKAP5L_chr12_49786152_49833413	0/0	a0014	1334	1	0	0	1	0	0	copy fasta	NCKAP5L	chr12	49786152	49833413
NCKAP5L_chr12_49786152_49833413	0/0	a0015	1334	1	0	1	0	0	0	copy fasta	NCKAP5L	chr12	49786152	49833413
NCKAP5_chr2_132666788_133573463	0/0	a0001	1909	15	11	2	2	0	0	copy fasta	NCKAP5	chr2	132666788	133573463
NCKAP5_chr2_132666788_133573463	0/0	a0002	1909	9	7	0	2	0	0	copy fasta	NCKAP5	chr2	132666788	133573463
NCKAP5_chr2_132666788_133573463	0/0	a0003	1909	8	2	1	5	0	0	copy fasta	NCKAP5	chr2	132666788	133573463
NCKAP5_chr2_132666788_133573463	0/0	a0004	1909	7	6	1	0	0	0	copy fasta	NCKAP5	chr2	132666788	133573463
NCKAP5_chr2_132666788_133573463	0/0	a0005	1909	6	5	1	0	0	0	copy fasta	NCKAP5	chr2	132666788	133573463
NCKAP5_chr2_132666788_133573463	0/0	a0006	1909	5	1	2	2	0	0	copy fasta	NCKAP5	chr2	132666788	133573463
NCKAP5_chr2_132666788_133573463	0/0	a0007	1909	5	3	1	1	0	0	copy fasta	NCKAP5	chr2	132666788	133573463
NCKAP5_chr2_132666788_133573463	0/0	a0008	1909	4	4	0	0	0	0	copy fasta	NCKAP5	chr2	132666788	133573463
NCKAP5_chr2_132666788_133573463	0/0	a0009	1909	2	2	0	0	0	0	copy fasta	NCKAP5	chr2	132666788	133573463
NCKAP5_chr2_132666788_133573463	0/0	a0010	1909	1	0	1	0	0	0	copy fasta	NCKAP5	chr2	132666788	133573463
NCKAP5_chr2_132666788_133573463	0/0	a0011	1909	1	1	0	0	0	0	copy fasta	NCKAP5	chr2	132666788	133573463
NCKAP5_chr2_132666788_133573463	0/0	a0012	1909	1	1	0	0	0	0	copy fasta	NCKAP5	chr2	132666788	133573463
NCKAP5_chr2_132666788_133573463	0/0	a0013	1909	1	0	1	0	0	0	copy fasta	NCKAP5	chr2	132666788	133573463
NCKAP5_chr2_132666788_133573463	0/0	a0014	1909	1	1	0	0	0	0	copy fasta	NCKAP5	chr2	132666788	133573463
NCKAP5_chr2_132666788_133573463	0/0	a0015	1909	1	1	0	0	0	0	copy fasta	NCKAP5	chr2	132666788	133573463
NCKAP5_chr2_132666788_133573463	0/0	a0016	1909	1	1	0	0	0	0	copy fasta	NCKAP5	chr2	132666788	133573463
NCKAP5_chr2_132666788_133573463	0/0	a0017	1909	1	1	0	0	0	0	copy fasta	NCKAP5	chr2	132666788	133573463
NCKAP5_chr2_132666788_133573463	0/0	a0018	1909	1	1	0	0	0	0	copy fasta	NCKAP5	chr2	132666788	133573463