JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NECAB1_chr8_90786775_90964393	1/1	a0001	351	247	67	40	108	10	20	copy fasta	NECAB1	chr8	90786775	90964393
NECAB1_chr8_90786775_90964393	0/0	a0002	351	1	1	0	0	0	0	copy fasta	NECAB1	chr8	90786775	90964393
NECAB2_chr16_83963244_84007776	1/1	a0001	386	138	8	46	43	11	28	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	a0002	386	113	38	10	58	1	6	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	a0003	386	42	32	7	2	1	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	a0004	386	32	13	4	10	0	5	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	a0005	386	10	0	3	6	0	1	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	a0006	386	4	4	0	0	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	a0007	386	4	0	0	4	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	a0008	386	3	3	0	0	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	a0009	386	1	0	0	1	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	a0010	386	1	0	0	0	1	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	a0011	386	1	0	0	1	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	a0012	386	1	1	0	0	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	a0013	386	1	0	1	0	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	a0014	386	1	0	0	1	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	a0015	386	1	1	0	0	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	a0016	386	1	0	1	0	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB3_chr20_33652087_33679428	1/1	a0001	396	348	87	57	141	16	45	copy fasta	NECAB3	chr20	33652087	33679428
NECAB3_chr20_33652087_33679428	0/0	a0002	396	7	6	1	0	0	0	copy fasta	NECAB3	chr20	33652087	33679428
NECAB3_chr20_33652087_33679428	0/0	a0003	396	3	0	3	0	0	0	copy fasta	NECAB3	chr20	33652087	33679428
NECAB3_chr20_33652087_33679428	0/0	a0004	396	3	3	0	0	0	0	copy fasta	NECAB3	chr20	33652087	33679428
NECAB3_chr20_33652087_33679428	0/0	a0005	396	1	0	0	0	0	1	copy fasta	NECAB3	chr20	33652087	33679428
NECAB3_chr20_33652087_33679428	0/0	a0006	396	1	1	0	0	0	0	copy fasta	NECAB3	chr20	33652087	33679428
NECAB3_chr20_33652087_33679428	0/0	a0007	396	1	0	0	1	0	0	copy fasta	NECAB3	chr20	33652087	33679428
NECAB3_chr20_33652087_33679428	0/0	a0008	396	1	1	0	0	0	0	copy fasta	NECAB3	chr20	33652087	33679428
NECAB3_chr20_33652087_33679428	0/0	a0009	396	1	1	0	0	0	0	copy fasta	NECAB3	chr20	33652087	33679428
NECAB3_chr20_33652087_33679428	0/0	a0010	396	1	1	0	0	0	0	copy fasta	NECAB3	chr20	33652087	33679428
NECAB3_chr20_33652087_33679428	0/0	a0011	396	1	0	1	0	0	0	copy fasta	NECAB3	chr20	33652087	33679428
NECAP1_chr12_8077274_8102881	1/1	a0001	275	431	90	73	202	14	50	copy fasta	NECAP1	chr12	8077274	8102881
NECAP1_chr12_8077274_8102881	0/0	a0002	275	4	4	0	0	0	0	copy fasta	NECAP1	chr12	8077274	8102881
NECAP1_chr12_8077274_8102881	0/0	a0003	275	1	0	1	0	0	0	copy fasta	NECAP1	chr12	8077274	8102881
NECAP2_chr1_16435724_16465078	1/1	a0001	263	382	87	78	157	18	40	copy fasta	NECAP2	chr1	16435724	16465078
NECAP2_chr1_16435724_16465078	0/0	a0002	263	1	0	0	0	0	1	copy fasta	NECAP2	chr1	16435724	16465078
NECAP2_chr1_16435724_16465078	0/0	a0003	263	1	0	0	1	0	0	copy fasta	NECAP2	chr1	16435724	16465078
NECAP2_chr1_16435724_16465078	0/0	a0004	263	1	0	0	0	0	1	copy fasta	NECAP2	chr1	16435724	16465078
NECAP2_chr1_16435724_16465078	0/0	a0005	263	1	1	0	0	0	0	copy fasta	NECAP2	chr1	16435724	16465078
NECTIN1_chr11_119655992_119734200	1/1	a0001	517	324	86	58	136	11	31	copy fasta	NECTIN1	chr11	119655992	119734200
NECTIN1_chr11_119655992_119734200	0/0	a0002	518	13	0	2	9	2	0	copy fasta	NECTIN1	chr11	119655992	119734200
NECTIN1_chr11_119655992_119734200	0/0	a0003	517	4	4	0	0	0	0	copy fasta	NECTIN1	chr11	119655992	119734200
NECTIN1_chr11_119655992_119734200	0/0	a0004	517	3	0	2	0	1	0	copy fasta	NECTIN1	chr11	119655992	119734200
NECTIN1_chr11_119655992_119734200	0/0	a0005	517	2	2	0	0	0	0	copy fasta	NECTIN1	chr11	119655992	119734200
NECTIN1_chr11_119655992_119734200	0/0	a0006	517	1	0	0	1	0	0	copy fasta	NECTIN1	chr11	119655992	119734200
NECTIN1_chr11_119655992_119734200	0/0	a0007	517	1	0	0	0	0	1	copy fasta	NECTIN1	chr11	119655992	119734200
NECTIN2_chr19_44841297_44894223	1/1	a0001	538	347	89	68	141	14	33	copy fasta	NECTIN2	chr19	44841297	44894223
NECTIN2_chr19_44841297_44894223	0/0	a0002	538	11	0	9	1	0	1	copy fasta	NECTIN2	chr19	44841297	44894223
NECTIN2_chr19_44841297_44894223	0/0	a0003	538	5	5	0	0	0	0	copy fasta	NECTIN2	chr19	44841297	44894223
NECTIN2_chr19_44841297_44894223	0/0	a0004	538	1	0	0	1	0	0	copy fasta	NECTIN2	chr19	44841297	44894223
NECTIN2_chr19_44841297_44894223	0/0	a0005	538	1	1	0	0	0	0	copy fasta	NECTIN2	chr19	44841297	44894223
NECTIN2_chr19_44841297_44894223	0/0	a0006	538	1	0	0	0	0	1	copy fasta	NECTIN2	chr19	44841297	44894223