JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NEXMIF_chrX_74727856_74930452	0/0	a0002	1516	2	2	0	0	0	0	copy fasta	NEXMIF	chrX	74727856	74930452
NEXMIF_chrX_74727856_74930452	0/0	a0003	1516	1	1	0	0	0	0	copy fasta	NEXMIF	chrX	74727856	74930452
NEXMIF_chrX_74727856_74930452	0/0	a0004	1516	1	0	0	0	0	1	copy fasta	NEXMIF	chrX	74727856	74930452
NEXMIF_chrX_74727856_74930452	0/0	a0005	1159	1	0	0	1	0	0	copy fasta	NEXMIF	chrX	74727856	74930452
NEXMIF_chrX_74727856_74930452	0/0	a0006	1516	1	1	0	0	0	0	copy fasta	NEXMIF	chrX	74727856	74930452
NEXMIF_chrX_74727856_74930452	0/0	a0007	1516	1	0	0	0	0	1	copy fasta	NEXMIF	chrX	74727856	74930452
NEXMIF_chrX_74727856_74930452	0/0	a0008	1516	1	0	0	0	0	1	copy fasta	NEXMIF	chrX	74727856	74930452
NEXMIF_chrX_74727856_74930452	0/0	a0009	1516	1	0	1	0	0	0	copy fasta	NEXMIF	chrX	74727856	74930452
NEXN_chr1_77883624_77948895	1/1	a0001	675	231	73	50	65	8	33	copy fasta	NEXN	chr1	77883624	77948895
NEXN_chr1_77883624_77948895	0/0	a0002	675	33	0	9	19	4	1	copy fasta	NEXN	chr1	77883624	77948895
NEXN_chr1_77883624_77948895	0/0	a0003	675	1	0	1	0	0	0	copy fasta	NEXN	chr1	77883624	77948895
NEXN_chr1_77883624_77948895	0/0	a0004	675	1	0	0	1	0	0	copy fasta	NEXN	chr1	77883624	77948895
NEXN_chr1_77883624_77948895	0/0	a0005	675	1	0	0	1	0	0	copy fasta	NEXN	chr1	77883624	77948895
NEXN_chr1_77883624_77948895	0/0	a0006	675	1	1	0	0	0	0	copy fasta	NEXN	chr1	77883624	77948895
NF1_chr17_31089977_31382675	1/1	a0001	2839	241	73	36	102	8	20	copy fasta	NF1	chr17	31089977	31382675
NF1_chr17_31089977_31382675	0/0	a0002	2839	4	0	4	0	0	0	copy fasta	NF1	chr17	31089977	31382675
NF1_chr17_31089977_31382675	0/0	a0003	2839	2	0	0	2	0	0	copy fasta	NF1	chr17	31089977	31382675
NF1_chr17_31089977_31382675	0/0	a0004	2839	1	1	0	0	0	0	copy fasta	NF1	chr17	31089977	31382675
NF1_chr17_31089977_31382675	0/0	a0005	2839	1	0	1	0	0	0	copy fasta	NF1	chr17	31089977	31382675
NF1_chr17_31089977_31382675	0/0	a0006	2839	1	0	1	0	0	0	copy fasta	NF1	chr17	31089977	31382675
NF1_chr17_31089977_31382675	0/0	a0007	2839	1	0	0	1	0	0	copy fasta	NF1	chr17	31089977	31382675
NF1_chr17_31089977_31382675	0/0	a0008	24	1	0	0	1	0	0	copy fasta	NF1	chr17	31089977	31382675
NF2_chr22_29598633_29703598	1/1	a0001	595	342	90	62	137	16	35	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	a0002	595	1	0	0	0	0	1	copy fasta	NF2	chr22	29598633	29703598
NF2_chr22_29598633_29703598	0/0	a0003	595	1	0	0	1	0	0	copy fasta	NF2	chr22	29598633	29703598
NFAM1_chr22_42375407_42437403	1/1	a0001	270	358	75	75	144	16	46	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	a0002	270	12	12	0	0	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	a0003	270	6	6	0	0	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	a0004	270	5	4	1	0	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	a0005	270	1	1	0	0	0	0	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	a0006	270	1	0	0	0	0	1	copy fasta	NFAM1	chr22	42375407	42437403
NFAM1_chr22_42375407_42437403	0/0	a0007	270	1	0	0	0	0	1	copy fasta	NFAM1	chr22	42375407	42437403
NFASC_chr1_204823652_205027822	1/1	a0001	1240	145	49	45	33	4	12	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	a0002	1240	50	5	10	30	0	5	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	a0003	1240	15	15	0	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	a0004	1240	6	5	1	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	a0005	1240	2	0	1	1	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	a0006	1240	1	1	0	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	a0007	1240	1	0	0	1	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	a0008	1240	1	0	1	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	a0009	1240	1	0	1	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	a0010	1240	1	0	1	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	a0011	1240	1	1	0	0	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	a0012	1240	1	0	0	1	0	0	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204823652_205027822	0/0	a0013	1240	1	0	0	0	0	1	copy fasta	NFASC	chr1	204823652	205027822
NFASC_chr1_204865862_205027822	1/1	a0001	1189	254	85	56	68	12	31	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	a0002	1189	3	0	1	2	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	a0003	1189	1	1	0	0	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	a0004	1189	1	0	1	0	0	0	copy fasta	NFASC	chr1	204865862	205027822
NFASC_chr1_204865862_205027822	0/0	a0005	1189	1	0	0	1	0	0	copy fasta	NFASC	chr1	204865862	205027822