JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NMNAT3_chr3_139555191_139682972	1/1	a0001	252	319	84	64	120	16	33	copy fasta	NMNAT3	chr3	139555191	139682972
NMNAT3_chr3_139555191_139682972	0/0	a0002	252	1	0	0	0	0	1	copy fasta	NMNAT3	chr3	139555191	139682972
NMNAT3_chr3_139555191_139682972	0/0	a0003	252	1	1	0	0	0	0	copy fasta	NMNAT3	chr3	139555191	139682972
NMNAT3_chr3_139555191_139682972	0/0	a0004	252	1	1	0	0	0	0	copy fasta	NMNAT3	chr3	139555191	139682972
NMRAL1_chr16_4456694_4479625	0/1	a0001	299	325	91	52	131	13	37	copy fasta	NMRAL1	chr16	4456694	4479625
NMRAL1_chr16_4456694_4479625	0/0	a0002	299	31	0	0	31	0	0	copy fasta	NMRAL1	chr16	4456694	4479625
NMRAL1_chr16_4456694_4479625	0/0	a0003	299	5	1	2	0	1	1	copy fasta	NMRAL1	chr16	4456694	4479625
NMRAL1_chr16_4456694_4479625	0/0	a0004	299	2	0	2	0	0	0	copy fasta	NMRAL1	chr16	4456694	4479625
NMRAL1_chr16_4456694_4479625	0/0	a0005	299	2	2	0	0	0	0	copy fasta	NMRAL1	chr16	4456694	4479625
NMRAL1_chr16_4456694_4479625	0/0	a0006	299	1	0	0	1	0	0	copy fasta	NMRAL1	chr16	4456694	4479625
NMRAL1_chr16_4456694_4479625	0/0	a0007	299	1	0	0	1	0	0	copy fasta	NMRAL1	chr16	4456694	4479625
NMRAL1_chr16_4456694_4479625	0/0	a0008	299	1	1	0	0	0	0	copy fasta	NMRAL1	chr16	4456694	4479625
NMRAL1_chr16_4456694_4479625	0/0	a0009	299	1	0	0	1	0	0	copy fasta	NMRAL1	chr16	4456694	4479625
NMRAL1_chr16_4456694_4479625	0/0	a0010	299	1	0	0	1	0	0	copy fasta	NMRAL1	chr16	4456694	4479625
NMRAL1_chr16_4456694_4479625	0/0	a0011	299	1	0	0	0	0	1	copy fasta	NMRAL1	chr16	4456694	4479625
NMRAL1_chr16_4456694_4479625	0/0	a0012	299	1	1	0	0	0	0	copy fasta	NMRAL1	chr16	4456694	4479625
NMRAL1_chr16_4456694_4479625	0/0	a0013	299	1	0	0	0	0	1	copy fasta	NMRAL1	chr16	4456694	4479625
NMRK1_chr9_75055577_75093155	1/1	a0001	199	415	90	79	178	18	48	copy fasta	NMRK1	chr9	75055577	75093155
NMRK1_chr9_75055577_75093155	0/0	a0002	199	3	2	1	0	0	0	copy fasta	NMRK1	chr9	75055577	75093155
NMRK2_chr19_3928069_3947416	1/1	a0001	230	387	84	82	164	16	39	copy fasta	NMRK2	chr19	3928069	3947416
NMRK2_chr19_3928069_3947416	0/0	a0002	230	6	6	0	0	0	0	copy fasta	NMRK2	chr19	3928069	3947416
NMRK2_chr19_3928069_3947416	0/0	a0003	230	5	5	0	0	0	0	copy fasta	NMRK2	chr19	3928069	3947416
NMRK2_chr19_3928069_3947416	0/0	a0004	230	2	2	0	0	0	0	copy fasta	NMRK2	chr19	3928069	3947416
NMRK2_chr19_3928069_3947416	0/0	a0005	230	1	0	0	0	0	1	copy fasta	NMRK2	chr19	3928069	3947416
NMRK2_chr19_3928069_3947416	0/0	a0006	230	1	0	0	1	0	0	copy fasta	NMRK2	chr19	3928069	3947416
NMRK2_chr19_3928069_3947416	0/0	a0007	230	1	1	0	0	0	0	copy fasta	NMRK2	chr19	3928069	3947416
NMRK2_chr19_3928069_3947416	0/0	a0008	59	1	0	0	1	0	0	copy fasta	NMRK2	chr19	3928069	3947416
NMS_chr2_100465482_100488280	1/1	a0001	153	263	72	57	94	8	30	copy fasta	NMS	chr2	100465482	100488280
NMS_chr2_100465482_100488280	0/0	a0002	153	118	25	17	56	4	16	copy fasta	NMS	chr2	100465482	100488280
NMS_chr2_100465482_100488280	0/0	a0003	135	13	1	0	12	0	0	copy fasta	NMS	chr2	100465482	100488280
NMS_chr2_100465482_100488280	0/0	a0004	153	1	0	0	1	0	0	copy fasta	NMS	chr2	100465482	100488280
NMS_chr2_100465482_100488280	0/0	a0005	153	1	0	0	1	0	0	copy fasta	NMS	chr2	100465482	100488280
NMT1_chr17_45056317_45114016	1/1	a0001	496	386	92	82	148	16	46	copy fasta	NMT1	chr17	45056317	45114016
NMT2_chr10_15100770_15173693	1/1	a0001	498	275	95	50	94	12	22	copy fasta	NMT2	chr10	15100770	15173693
NMT2_chr10_15100770_15173693	0/0	a0002	498	1	1	0	0	0	0	copy fasta	NMT2	chr10	15100770	15173693
NMUR1_chr2_231518187_231535445	1/1	a0001	426	412	89	75	184	18	44	copy fasta	NMUR1	chr2	231518187	231535445
NMUR1_chr2_231518187_231535445	0/0	a0002	426	4	0	0	4	0	0	copy fasta	NMUR1	chr2	231518187	231535445
NMUR1_chr2_231518187_231535445	0/0	a0003	426	4	0	0	4	0	0	copy fasta	NMUR1	chr2	231518187	231535445
NMUR1_chr2_231518187_231535445	0/0	a0004	426	2	0	0	2	0	0	copy fasta	NMUR1	chr2	231518187	231535445
NMUR1_chr2_231518187_231535445	0/0	a0005	114	1	0	0	1	0	0	copy fasta	NMUR1	chr2	231518187	231535445
NMUR1_chr2_231518187_231535445	0/0	a0006	426	1	1	0	0	0	0	copy fasta	NMUR1	chr2	231518187	231535445
NMUR1_chr2_231518187_231535445	0/0	a0007	426	1	0	0	1	0	0	copy fasta	NMUR1	chr2	231518187	231535445
NMUR1_chr2_231518187_231535445	0/0	a0008	426	1	0	0	1	0	0	copy fasta	NMUR1	chr2	231518187	231535445
NMUR1_chr2_231518187_231535445	0/0	a0009	426	1	0	1	0	0	0	copy fasta	NMUR1	chr2	231518187	231535445
NMUR1_chr2_231518187_231535445	0/0	a0010	426	1	0	0	1	0	0	copy fasta	NMUR1	chr2	231518187	231535445
NMUR2_chr5_152386546_152410279	0/1	a0001	415	390	91	51	195	15	37	copy fasta	NMUR2	chr5	152386546	152410279
NMUR2_chr5_152386546_152410279	0/0	a0002	415	41	3	26	3	1	8	copy fasta	NMUR2	chr5	152386546	152410279
NMUR2_chr5_152386546_152410279	0/0	a0003	156	7	0	0	5	0	2	copy fasta	NMUR2	chr5	152386546	152410279
NMUR2_chr5_152386546_152410279	0/0	a0004	415	2	0	1	0	0	1	copy fasta	NMUR2	chr5	152386546	152410279
NMUR2_chr5_152386546_152410279	0/0	a0005	415	1	1	0	0	0	0	copy fasta	NMUR2	chr5	152386546	152410279