JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NUDT9_chr4_87417573_87464455	0/0	a0003	350	2	0	2	0	0	0	copy fasta	NUDT9	chr4	87417573	87464455
NUDT9_chr4_87417573_87464455	0/0	a0004	350	1	0	0	0	0	1	copy fasta	NUDT9	chr4	87417573	87464455
NUDT9_chr4_87417573_87464455	0/0	a0005	57	1	0	1	0	0	0	copy fasta	NUDT9	chr4	87417573	87464455
NUF2_chr1_163316954_163360759	1/1	a0001	464	340	70	69	152	10	37	copy fasta	NUF2	chr1	163316954	163360759
NUF2_chr1_163316954_163360759	0/0	a0002	464	40	16	7	10	2	5	copy fasta	NUF2	chr1	163316954	163360759
NUF2_chr1_163316954_163360759	0/0	a0003	464	8	4	0	4	0	0	copy fasta	NUF2	chr1	163316954	163360759
NUF2_chr1_163316954_163360759	0/0	a0004	464	6	0	0	6	0	0	copy fasta	NUF2	chr1	163316954	163360759
NUF2_chr1_163316954_163360759	0/0	a0005	464	2	0	2	0	0	0	copy fasta	NUF2	chr1	163316954	163360759
NUF2_chr1_163316954_163360759	0/0	a0006	464	1	0	1	0	0	0	copy fasta	NUF2	chr1	163316954	163360759
NUF2_chr1_163316954_163360759	0/0	a0007	464	1	1	0	0	0	0	copy fasta	NUF2	chr1	163316954	163360759
NUF2_chr1_163316954_163360759	0/0	a0008	464	1	1	0	0	0	0	copy fasta	NUF2	chr1	163316954	163360759
NUF2_chr1_163316954_163360759	0/0	a0009	464	1	0	1	0	0	0	copy fasta	NUF2	chr1	163316954	163360759
NUFIP1_chr13_44934249_44994471	1/0	a0001	495	197	70	29	83	2	12	copy fasta	NUFIP1	chr13	44934249	44994471
NUFIP1_chr13_44934249_44994471	0/1	a0002	495	116	12	29	57	2	15	copy fasta	NUFIP1	chr13	44934249	44994471
NUFIP1_chr13_44934249_44994471	0/0	a0003	495	1	1	0	0	0	0	copy fasta	NUFIP1	chr13	44934249	44994471
NUFIP1_chr13_44934249_44994471	0/0	a0004	495	1	0	0	0	0	1	copy fasta	NUFIP1	chr13	44934249	44994471
NUFIP1_chr13_44934249_44994471	0/0	a0005	495	1	1	0	0	0	0	copy fasta	NUFIP1	chr13	44934249	44994471
NUFIP2_chr17_29250839_29299148	1/1	a0001	695	345	79	68	141	13	42	copy fasta	NUFIP2	chr17	29250839	29299148
NUFIP2_chr17_29250839_29299148	0/0	a0002	695	7	7	0	0	0	0	copy fasta	NUFIP2	chr17	29250839	29299148
NUFIP2_chr17_29250839_29299148	0/0	a0003	695	2	2	0	0	0	0	copy fasta	NUFIP2	chr17	29250839	29299148
NUFIP2_chr17_29250839_29299148	0/0	a0004	695	1	0	0	0	1	0	copy fasta	NUFIP2	chr17	29250839	29299148
NUFIP2_chr17_29250839_29299148	0/0	a0005	695	1	0	0	1	0	0	copy fasta	NUFIP2	chr17	29250839	29299148
NUGGC_chr8_28016964_28088936	0/1	a0001	796	151	23	35	68	9	15	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	a0002	796	82	27	11	32	3	9	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	a0003	796	64	3	11	43	3	4	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	a0004	796	60	6	11	29	2	12	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	a0005	796	8	6	1	0	0	1	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	a0006	796	4	4	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	a0007	796	4	0	0	4	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	1/0	a0008	796	4	3	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	a0009	796	3	2	1	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	a0010	796	3	1	1	0	1	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	a0011	796	2	2	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	a0012	796	2	0	0	2	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	a0013	796	2	2	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	a0014	796	2	2	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	a0015	796	2	2	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	a0016	796	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	a0017	796	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	a0018	796	1	0	1	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	a0019	796	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	a0020	796	1	0	0	1	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	a0021	796	1	0	0	1	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	a0022	796	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	a0023	796	1	0	0	0	0	1	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	a0024	796	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	a0025	796	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	a0026	796	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	a0027	796	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936
NUGGC_chr8_28016964_28088936	0/0	a0028	796	1	1	0	0	0	0	copy fasta	NUGGC	chr8	28016964	28088936