Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ARHGAP22_chr10_48441036_48610073	0/0	a0011	698	1	1	0	0	0	0	copy fasta	ARHGAP22	chr10	48441036	48610073
ARHGAP22_chr10_48441036_48610073	0/0	a0012	698	1	0	0	1	0	0	copy fasta	ARHGAP22	chr10	48441036	48610073
ARHGAP22_chr10_48441036_48610073	0/0	a0013	698	1	0	0	1	0	0	copy fasta	ARHGAP22	chr10	48441036	48610073
ARHGAP23_chr17_38423464_38517385	0/1	a0001	1491	267	68	58	91	14	35	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	a0002	352	8	1	2	4	0	1	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	a0003	1491	8	8	0	0	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	a0004	1491	5	4	1	0	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	a0005	1491	3	3	0	0	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	a0006	1491	2	2	0	0	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	a0007	1491	2	0	0	2	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	a0008	1491	2	1	0	1	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	a0009	1491	2	0	0	2	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	a0010	1491	1	0	1	0	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	a0011	1491	1	0	0	0	0	1	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	a0012	1491	1	1	0	0	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	a0013	1491	1	0	0	1	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	a0014	1491	1	0	1	0	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	a0015	1491	1	0	1	0	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	a0016	1491	1	1	0	0	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	a0017	1491	1	0	0	1	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	a0018	1491	1	1	0	0	0	0	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP23_chr17_38423464_38517385	0/0	a0019	1491	1	0	0	0	0	1	copy fasta	ARHGAP23	chr17	38423464	38517385
ARHGAP24_chr4_85470150_86007666	0/0	a0001	748	101	50	26	7	4	14	copy fasta	ARHGAP24	chr4	85470150	86007666
ARHGAP24_chr4_85470150_86007666	0/0	a0002	748	3	3	0	0	0	0	copy fasta	ARHGAP24	chr4	85470150	86007666
ARHGAP24_chr4_85470150_86007666	0/0	a0003	748	2	0	2	0	0	0	copy fasta	ARHGAP24	chr4	85470150	86007666
ARHGAP24_chr4_85470150_86007666	0/0	a0004	748	1	1	0	0	0	0	copy fasta	ARHGAP24	chr4	85470150	86007666
ARHGAP24_chr4_85470150_86007666	0/0	a0005	748	1	0	0	1	0	0	copy fasta	ARHGAP24	chr4	85470150	86007666
ARHGAP25_chr2_68729811_68831833	0/0	a0001	646	138	38	22	63	6	9	copy fasta	ARHGAP25	chr2	68729811	68831833
ARHGAP25_chr2_68729811_68831833	1/1	a0002	646	123	39	28	22	7	25	copy fasta	ARHGAP25	chr2	68729811	68831833
ARHGAP25_chr2_68729811_68831833	0/0	a0003	646	93	10	19	53	5	6	copy fasta	ARHGAP25	chr2	68729811	68831833
ARHGAP25_chr2_68729811_68831833	0/0	a0004	646	3	2	1	0	0	0	copy fasta	ARHGAP25	chr2	68729811	68831833
ARHGAP25_chr2_68729811_68831833	0/0	a0005	646	2	2	0	0	0	0	copy fasta	ARHGAP25	chr2	68729811	68831833
ARHGAP25_chr2_68729811_68831833	0/0	a0006	646	2	2	0	0	0	0	copy fasta	ARHGAP25	chr2	68729811	68831833
ARHGAP25_chr2_68729811_68831833	0/0	a0007	646	2	0	0	2	0	0	copy fasta	ARHGAP25	chr2	68729811	68831833
ARHGAP25_chr2_68729811_68831833	0/0	a0008	646	1	0	0	1	0	0	copy fasta	ARHGAP25	chr2	68729811	68831833
ARHGAP25_chr2_68729811_68831833	0/0	a0009	646	1	1	0	0	0	0	copy fasta	ARHGAP25	chr2	68729811	68831833
ARHGAP25_chr2_68729811_68831833	0/0	a0010	646	1	1	0	0	0	0	copy fasta	ARHGAP25	chr2	68729811	68831833
ARHGAP25_chr2_68729811_68831833	0/0	a0011	646	1	1	0	0	0	0	copy fasta	ARHGAP25	chr2	68729811	68831833
ARHGAP25_chr2_68729811_68831833	0/0	a0012	646	1	0	0	1	0	0	copy fasta	ARHGAP25	chr2	68729811	68831833
ARHGAP26_chr5_142765377_143234007	1/1	a0001	759	197	69	18	86	2	20	copy fasta	ARHGAP26	chr5	142765377	143234007
ARHGAP26_chr5_142765377_143234007	0/0	a0002	759	1	1	0	0	0	0	copy fasta	ARHGAP26	chr5	142765377	143234007
ARHGAP27_chr17_45388908_45437870	0/1	a0001	889	181	42	36	69	9	24	copy fasta	ARHGAP27	chr17	45388908	45437870
ARHGAP27_chr17_45388908_45437870	0/0	a0002	889	101	29	17	43	3	9	copy fasta	ARHGAP27	chr17	45388908	45437870
ARHGAP27_chr17_45388908_45437870	0/0	a0003	889	31	5	6	20	0	0	copy fasta	ARHGAP27	chr17	45388908	45437870
ARHGAP27_chr17_45388908_45437870	0/0	a0004	889	20	1	8	1	4	6	copy fasta	ARHGAP27	chr17	45388908	45437870
ARHGAP27_chr17_45388908_45437870	0/0	a0005	889	4	0	4	0	0	0	copy fasta	ARHGAP27	chr17	45388908	45437870
ARHGAP27_chr17_45388908_45437870	0/0	a0006	889	4	3	1	0	0	0	copy fasta	ARHGAP27	chr17	45388908	45437870
ARHGAP27_chr17_45388908_45437870	0/0	a0007	889	2	0	0	2	0	0	copy fasta	ARHGAP27	chr17	45388908	45437870
ARHGAP27_chr17_45388908_45437870	0/0	a0008	889	1	0	0	1	0	0	copy fasta	ARHGAP27	chr17	45388908	45437870
ARHGAP27_chr17_45388908_45437870	0/0	a0009	889	1	1	0	0	0	0	copy fasta	ARHGAP27	chr17	45388908	45437870