Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ARHGAP32_chr11_128960060_129197325	0/0	a0004	2101	3	3	0	0	0	0	copy fasta	ARHGAP32	chr11	128960060	129197325
ARHGAP32_chr11_128960060_129197325	0/0	a0005	2101	3	3	0	0	0	0	copy fasta	ARHGAP32	chr11	128960060	129197325
ARHGAP32_chr11_128960060_129197325	0/0	a0006	2101	2	0	0	0	0	2	copy fasta	ARHGAP32	chr11	128960060	129197325
ARHGAP32_chr11_128960060_129197325	0/0	a0007	2101	1	0	1	0	0	0	copy fasta	ARHGAP32	chr11	128960060	129197325
ARHGAP32_chr11_128960060_129197325	0/0	a0008	2101	1	0	0	0	0	1	copy fasta	ARHGAP32	chr11	128960060	129197325
ARHGAP32_chr11_128960060_129197325	0/0	a0009	2101	1	0	1	0	0	0	copy fasta	ARHGAP32	chr11	128960060	129197325
ARHGAP32_chr11_128960060_129197325	0/0	a0010	2101	1	1	0	0	0	0	copy fasta	ARHGAP32	chr11	128960060	129197325
ARHGAP32_chr11_128960060_129197325	0/0	a0011	2101	1	1	0	0	0	0	copy fasta	ARHGAP32	chr11	128960060	129197325
ARHGAP32_chr11_128960060_129197325	0/0	a0012	2101	1	1	0	0	0	0	copy fasta	ARHGAP32	chr11	128960060	129197325
ARHGAP32_chr11_128960060_129197325	0/0	a0013	2101	1	0	0	1	0	0	copy fasta	ARHGAP32	chr11	128960060	129197325
ARHGAP32_chr11_128960060_129197325	0/0	a0014	2101	1	1	0	0	0	0	copy fasta	ARHGAP32	chr11	128960060	129197325
ARHGAP32_chr11_128960060_129197325	0/0	a0015	2101	1	0	1	0	0	0	copy fasta	ARHGAP32	chr11	128960060	129197325
ARHGAP32_chr11_128960060_129197325	0/0	a0016	2101	1	0	1	0	0	0	copy fasta	ARHGAP32	chr11	128960060	129197325
ARHGAP32_chr11_128960060_129197325	0/0	a0017	2101	1	0	0	1	0	0	copy fasta	ARHGAP32	chr11	128960060	129197325
ARHGAP32_chr11_128960060_129197325	0/0	a0018	2101	1	0	0	0	0	1	copy fasta	ARHGAP32	chr11	128960060	129197325
ARHGAP32_chr11_128960060_129197325	0/0	a0019	2101	1	0	0	1	0	0	copy fasta	ARHGAP32	chr11	128960060	129197325
ARHGAP33_chr19_35770564_35793822	1/1	a0001	1287	385	89	70	167	12	45	copy fasta	ARHGAP33	chr19	35770564	35793822
ARHGAP33_chr19_35770564_35793822	0/0	a0002	893	8	1	0	6	0	1	copy fasta	ARHGAP33	chr19	35770564	35793822
ARHGAP33_chr19_35770564_35793822	0/0	a0003	1287	5	0	0	5	0	0	copy fasta	ARHGAP33	chr19	35770564	35793822
ARHGAP33_chr19_35770564_35793822	0/0	a0004	1287	5	0	0	5	0	0	copy fasta	ARHGAP33	chr19	35770564	35793822
ARHGAP33_chr19_35770564_35793822	0/0	a0005	1287	2	2	0	0	0	0	copy fasta	ARHGAP33	chr19	35770564	35793822
ARHGAP33_chr19_35770564_35793822	0/0	a0006	1287	2	2	0	0	0	0	copy fasta	ARHGAP33	chr19	35770564	35793822
ARHGAP33_chr19_35770564_35793822	0/0	a0007	1287	1	0	0	1	0	0	copy fasta	ARHGAP33	chr19	35770564	35793822
ARHGAP33_chr19_35770564_35793822	0/0	a0008	1287	1	0	0	1	0	0	copy fasta	ARHGAP33	chr19	35770564	35793822
ARHGAP33_chr19_35770564_35793822	0/0	a0009	1287	1	1	0	0	0	0	copy fasta	ARHGAP33	chr19	35770564	35793822
ARHGAP33_chr19_35770564_35793822	0/0	a0010	1287	1	0	0	0	0	1	copy fasta	ARHGAP33	chr19	35770564	35793822
ARHGAP33_chr19_35770564_35793822	0/0	a0011	1287	1	0	0	1	0	0	copy fasta	ARHGAP33	chr19	35770564	35793822
ARHGAP33_chr19_35770564_35793822	0/0	a0012	1287	1	1	0	0	0	0	copy fasta	ARHGAP33	chr19	35770564	35793822
ARHGAP33_chr19_35770564_35793822	0/0	a0013	1287	1	0	1	0	0	0	copy fasta	ARHGAP33	chr19	35770564	35793822
ARHGAP33_chr19_35770564_35793822	0/0	a0014	1287	1	0	1	0	0	0	copy fasta	ARHGAP33	chr19	35770564	35793822
ARHGAP33_chr19_35770564_35793822	0/0	a0015	1287	1	0	0	1	0	0	copy fasta	ARHGAP33	chr19	35770564	35793822
ARHGAP33_chr19_35770564_35793822	0/0	a0016	1271	1	0	0	1	0	0	copy fasta	ARHGAP33	chr19	35770564	35793822
ARHGAP33_chr19_35770564_35793822	0/0	a0017	1287	1	0	0	1	0	0	copy fasta	ARHGAP33	chr19	35770564	35793822
ARHGAP33_chr19_35770564_35793822	0/0	a0018	1287	1	0	0	0	0	1	copy fasta	ARHGAP33	chr19	35770564	35793822
ARHGAP33_chr19_35770564_35793822	0/0	a0019	893	1	0	0	1	0	0	copy fasta	ARHGAP33	chr19	35770564	35793822
ARHGAP35_chr19_46855997_47010077	1/1	a0001	1499	292	87	49	116	10	28	copy fasta	ARHGAP35	chr19	46855997	47010077
ARHGAP35_chr19_46855997_47010077	0/0	a0002	1499	2	0	0	2	0	0	copy fasta	ARHGAP35	chr19	46855997	47010077
ARHGAP35_chr19_46855997_47010077	0/0	a0003	1499	1	0	1	0	0	0	copy fasta	ARHGAP35	chr19	46855997	47010077
ARHGAP35_chr19_46855997_47010077	0/0	a0004	1499	1	1	0	0	0	0	copy fasta	ARHGAP35	chr19	46855997	47010077
ARHGAP35_chr19_46855997_47010077	0/0	a0005	1499	1	1	0	0	0	0	copy fasta	ARHGAP35	chr19	46855997	47010077
ARHGAP35_chr19_46855997_47010077	0/0	a0006	1499	1	1	0	0	0	0	copy fasta	ARHGAP35	chr19	46855997	47010077
ARHGAP36_chrX_131053346_131094885	0/0	a0000	0	1	0	0	1	0	0	copy fasta	ARHGAP36	chrX	131053346	131094885
ARHGAP36_chrX_131053346_131094885	1/1	a0001	547	300	72	48	139	9	30	copy fasta	ARHGAP36	chrX	131053346	131094885
ARHGAP36_chrX_131053346_131094885	0/0	a0002	547	1	0	0	1	0	0	copy fasta	ARHGAP36	chrX	131053346	131094885
ARHGAP39_chr8_144524179_144690846	1/1	a0001	1114	241	88	50	73	10	18	copy fasta	ARHGAP39	chr8	144524179	144690846
ARHGAP39_chr8_144524179_144690846	0/0	a0002	1114	2	0	0	2	0	0	copy fasta	ARHGAP39	chr8	144524179	144690846
ARHGAP39_chr8_144524179_144690846	0/0	a0003	1114	1	1	0	0	0	0	copy fasta	ARHGAP39	chr8	144524179	144690846
ARHGAP39_chr8_144524179_144690846	0/0	a0004	1114	1	0	0	1	0	0	copy fasta	ARHGAP39	chr8	144524179	144690846
ARHGAP39_chr8_144524179_144690846	0/0	a0005	1114	1	1	0	0	0	0	copy fasta	ARHGAP39	chr8	144524179	144690846
ARHGAP40_chr20_38596809_38655653	1/1	a0001	675	278	48	61	125	12	30	copy fasta	ARHGAP40	chr20	38596809	38655653