Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ARHGAP40_chr20_38596809_38655653	0/0	a0002	675	16	6	3	0	2	5	copy fasta	ARHGAP40	chr20	38596809	38655653
ARHGAP40_chr20_38596809_38655653	0/0	a0003	675	7	7	0	0	0	0	copy fasta	ARHGAP40	chr20	38596809	38655653
ARHGAP40_chr20_38596809_38655653	0/0	a0004	675	6	6	0	0	0	0	copy fasta	ARHGAP40	chr20	38596809	38655653
ARHGAP40_chr20_38596809_38655653	0/0	a0005	675	5	5	0	0	0	0	copy fasta	ARHGAP40	chr20	38596809	38655653
ARHGAP40_chr20_38596809_38655653	0/0	a0006	675	5	5	0	0	0	0	copy fasta	ARHGAP40	chr20	38596809	38655653
ARHGAP40_chr20_38596809_38655653	0/0	a0007	675	5	4	1	0	0	0	copy fasta	ARHGAP40	chr20	38596809	38655653
ARHGAP40_chr20_38596809_38655653	0/0	a0008	675	5	4	1	0	0	0	copy fasta	ARHGAP40	chr20	38596809	38655653
ARHGAP40_chr20_38596809_38655653	0/0	a0009	675	3	2	1	0	0	0	copy fasta	ARHGAP40	chr20	38596809	38655653
ARHGAP40_chr20_38596809_38655653	0/0	a0010	675	3	0	0	0	0	3	copy fasta	ARHGAP40	chr20	38596809	38655653
ARHGAP40_chr20_38596809_38655653	0/0	a0011	675	2	2	0	0	0	0	copy fasta	ARHGAP40	chr20	38596809	38655653
ARHGAP40_chr20_38596809_38655653	0/0	a0012	675	2	2	0	0	0	0	copy fasta	ARHGAP40	chr20	38596809	38655653
ARHGAP40_chr20_38596809_38655653	0/0	a0013	675	2	2	0	0	0	0	copy fasta	ARHGAP40	chr20	38596809	38655653
ARHGAP40_chr20_38596809_38655653	0/0	a0014	675	1	0	1	0	0	0	copy fasta	ARHGAP40	chr20	38596809	38655653
ARHGAP40_chr20_38596809_38655653	0/0	a0015	675	1	1	0	0	0	0	copy fasta	ARHGAP40	chr20	38596809	38655653
ARHGAP40_chr20_38596809_38655653	0/0	a0016	675	1	0	0	1	0	0	copy fasta	ARHGAP40	chr20	38596809	38655653
ARHGAP40_chr20_38596809_38655653	0/0	a0017	675	1	1	0	0	0	0	copy fasta	ARHGAP40	chr20	38596809	38655653
ARHGAP40_chr20_38596809_38655653	0/0	a0018	675	1	0	0	1	0	0	copy fasta	ARHGAP40	chr20	38596809	38655653
ARHGAP40_chr20_38596809_38655653	0/0	a0019	675	1	1	0	0	0	0	copy fasta	ARHGAP40	chr20	38596809	38655653
ARHGAP40_chr20_38596809_38655653	0/0	a0020	675	1	0	1	0	0	0	copy fasta	ARHGAP40	chr20	38596809	38655653
ARHGAP40_chr20_38596809_38655653	0/0	a0021	675	1	1	0	0	0	0	copy fasta	ARHGAP40	chr20	38596809	38655653
ARHGAP40_chr20_38596809_38655653	0/0	a0022	675	1	1	0	0	0	0	copy fasta	ARHGAP40	chr20	38596809	38655653
ARHGAP40_chr20_38596809_38655653	0/0	a0023	675	1	0	1	0	0	0	copy fasta	ARHGAP40	chr20	38596809	38655653
ARHGAP40_chr20_38596809_38655653	0/0	a0024	675	1	0	0	1	0	0	copy fasta	ARHGAP40	chr20	38596809	38655653
ARHGAP42_chr11_100682288_100998941	0/0	a0001	874	158	11	26	96	3	22	copy fasta	ARHGAP42	chr11	100682288	100998941
ARHGAP42_chr11_100682288_100998941	1/1	a0002	874	121	63	37	1	7	11	copy fasta	ARHGAP42	chr11	100682288	100998941
ARHGAP42_chr11_100682288_100998941	0/0	a0003	874	4	1	3	0	0	0	copy fasta	ARHGAP42	chr11	100682288	100998941
ARHGAP42_chr11_100682288_100998941	0/0	a0004	874	1	1	0	0	0	0	copy fasta	ARHGAP42	chr11	100682288	100998941
ARHGAP42_chr11_100682288_100998941	0/0	a0005	874	1	0	0	0	0	1	copy fasta	ARHGAP42	chr11	100682288	100998941
ARHGAP42_chr11_100682288_100998941	0/0	a0006	874	1	0	0	1	0	0	copy fasta	ARHGAP42	chr11	100682288	100998941
ARHGAP44_chr17_12784498_12996643	1/1	a0001	818	224	78	50	62	6	26	copy fasta	ARHGAP44	chr17	12784498	12996643
ARHGAP44_chr17_12784498_12996643	0/0	a0002	818	2	0	0	2	0	0	copy fasta	ARHGAP44	chr17	12784498	12996643
ARHGAP44_chr17_12784498_12996643	0/0	a0003	818	1	0	0	0	0	1	copy fasta	ARHGAP44	chr17	12784498	12996643
ARHGAP44_chr17_12784498_12996643	0/0	a0004	818	1	0	0	1	0	0	copy fasta	ARHGAP44	chr17	12784498	12996643
ARHGAP44_chr17_12784498_12996643	0/0	a0005	818	1	0	0	0	0	1	copy fasta	ARHGAP44	chr17	12784498	12996643
ARHGAP44_chr17_12784498_12996643	0/0	a0006	818	1	0	0	1	0	0	copy fasta	ARHGAP44	chr17	12784498	12996643
ARHGAP45_chr19_1062167_1091628	0/0	a0001	1136	126	31	25	48	7	15	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	a0002	1136	104	5	32	45	5	17	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	1/0	a0003	1136	93	4	9	60	5	14	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	a0004	1136	31	21	7	3	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	a0005	1136	19	2	3	12	1	1	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	a0006	1136	8	1	5	2	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	a0007	1136	6	0	0	5	0	1	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	a0008	1136	5	5	0	0	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	a0009	1136	5	5	0	0	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	a0010	1136	4	0	0	4	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	a0011	1138	3	3	0	0	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	a0012	1136	2	2	0	0	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/1	a0013	1136	1	0	0	0	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	a0014	1136	1	1	0	0	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	a0015	1136	1	1	0	0	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628