JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ARHGEF18_chr19_7343937_7477478	0/0	a0032	1361	1	0	0	1	0	0	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	a0033	1361	1	1	0	0	0	0	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	a0034	1361	1	0	0	0	0	1	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF19_chr1_16192854_16217652	1/1	a0001	802	255	76	37	105	10	25	copy fasta	ARHGEF19	chr1	16192854	16217652
ARHGEF19_chr1_16192854_16217652	0/0	a0002	802	79	8	27	25	3	16	copy fasta	ARHGEF19	chr1	16192854	16217652
ARHGEF19_chr1_16192854_16217652	0/0	a0003	802	8	0	5	0	2	1	copy fasta	ARHGEF19	chr1	16192854	16217652
ARHGEF19_chr1_16192854_16217652	0/0	a0004	802	7	5	2	0	0	0	copy fasta	ARHGEF19	chr1	16192854	16217652
ARHGEF19_chr1_16192854_16217652	0/0	a0005	802	3	0	0	3	0	0	copy fasta	ARHGEF19	chr1	16192854	16217652
ARHGEF19_chr1_16192854_16217652	0/0	a0006	802	2	1	1	0	0	0	copy fasta	ARHGEF19	chr1	16192854	16217652
ARHGEF19_chr1_16192854_16217652	0/0	a0007	802	2	0	0	2	0	0	copy fasta	ARHGEF19	chr1	16192854	16217652
ARHGEF19_chr1_16192854_16217652	0/0	a0008	802	1	0	0	1	0	0	copy fasta	ARHGEF19	chr1	16192854	16217652
ARHGEF19_chr1_16192854_16217652	0/0	a0009	807	1	0	0	1	0	0	copy fasta	ARHGEF19	chr1	16192854	16217652
ARHGEF19_chr1_16192854_16217652	0/0	a0010	802	1	0	0	0	1	0	copy fasta	ARHGEF19	chr1	16192854	16217652
ARHGEF19_chr1_16192854_16217652	0/0	a0011	802	1	1	0	0	0	0	copy fasta	ARHGEF19	chr1	16192854	16217652
ARHGEF19_chr1_16192854_16217652	0/0	a0012	802	1	1	0	0	0	0	copy fasta	ARHGEF19	chr1	16192854	16217652
ARHGEF19_chr1_16192854_16217652	0/0	a0013	802	1	0	0	1	0	0	copy fasta	ARHGEF19	chr1	16192854	16217652
ARHGEF1_chr19_41878184_41912452	1/1	a0001	912	224	65	42	82	8	25	copy fasta	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	a0002	912	4	0	0	4	0	0	copy fasta	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	a0003	912	1	0	1	0	0	0	copy fasta	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	a0004	912	1	1	0	0	0	0	copy fasta	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	a0005	912	1	0	1	0	0	0	copy fasta	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	a0006	907	1	0	1	0	0	0	copy fasta	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	a0007	912	1	0	1	0	0	0	copy fasta	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	a0008	912	1	0	0	0	0	1	copy fasta	ARHGEF1	chr19	41878184	41912452
ARHGEF25_chr12_57606435_57622245	0/0	a0001	580	199	33	40	102	5	19	copy fasta	ARHGEF25	chr12	57606435	57622245
ARHGEF25_chr12_57606435_57622245	1/1	a0002	580	132	42	25	39	6	18	copy fasta	ARHGEF25	chr12	57606435	57622245
ARHGEF25_chr12_57606435_57622245	0/0	a0003	580	65	16	5	34	3	7	copy fasta	ARHGEF25	chr12	57606435	57622245
ARHGEF25_chr12_57606435_57622245	0/0	a0004	580	22	6	8	8	0	0	copy fasta	ARHGEF25	chr12	57606435	57622245
ARHGEF25_chr12_57606435_57622245	0/0	a0005	580	5	0	0	5	0	0	copy fasta	ARHGEF25	chr12	57606435	57622245
ARHGEF25_chr12_57606435_57622245	0/0	a0006	580	1	1	0	0	0	0	copy fasta	ARHGEF25	chr12	57606435	57622245
ARHGEF26_chr3_154116390_154262825	0/1	a0001	871	154	32	33	61	11	16	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	a0002	871	105	23	12	58	3	9	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	a0003	871	10	2	7	0	1	0	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	a0004	871	3	2	1	0	0	0	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	a0005	871	2	2	0	0	0	0	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	a0006	871	2	2	0	0	0	0	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	a0007	871	2	2	0	0	0	0	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	a0008	871	1	0	0	0	1	0	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	a0009	871	1	0	0	1	0	0	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	a0010	871	1	1	0	0	0	0	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	a0011	871	1	0	1	0	0	0	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	a0012	871	1	0	0	0	0	1	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF28_chr5_73621196_73946990	1/1	a0001	1705	34	6	4	14	3	5	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	a0002	1705	31	9	9	9	1	3	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	a0003	1705	19	6	2	6	0	5	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	a0004	1705	16	13	1	0	0	2	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	a0005	1705	14	4	2	5	1	2	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	a0006	1705	10	3	2	3	2	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	a0007	1705	9	8	0	0	0	1	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	a0008	1705	5	3	2	0	0	0	copy fasta	ARHGEF28	chr5	73621196	73946990