Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ARHGEF39_chr9_35654343_35670195	0/0	a0005	335	1	1	0	0	0	0	copy fasta	ARHGEF39	chr9	35654343	35670195
ARHGEF39_chr9_35654343_35670195	0/0	a0006	335	1	0	1	0	0	0	copy fasta	ARHGEF39	chr9	35654343	35670195
ARHGEF39_chr9_35654343_35670195	0/0	a0007	335	1	1	0	0	0	0	copy fasta	ARHGEF39	chr9	35654343	35670195
ARHGEF39_chr9_35654343_35670195	0/0	a0008	335	1	1	0	0	0	0	copy fasta	ARHGEF39	chr9	35654343	35670195
ARHGEF3_chr3_56722420_56806949	1/0	a0001	526	209	37	33	99	10	29	copy fasta	ARHGEF3	chr3	56722420	56806949
ARHGEF3_chr3_56722420_56806949	0/1	a0002	526	145	44	21	60	6	13	copy fasta	ARHGEF3	chr3	56722420	56806949
ARHGEF3_chr3_56722420_56806949	0/0	a0003	526	2	0	0	2	0	0	copy fasta	ARHGEF3	chr3	56722420	56806949
ARHGEF3_chr3_56722420_56806949	0/0	a0004	526	1	1	0	0	0	0	copy fasta	ARHGEF3	chr3	56722420	56806949
ARHGEF3_chr3_56722420_56806949	0/0	a0005	526	1	0	0	1	0	0	copy fasta	ARHGEF3	chr3	56722420	56806949
ARHGEF40_chr14_21065304_21095248	0/0	a0001	1519	207	57	47	67	9	27	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	1/0	a0002	1519	68	0	3	51	5	8	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/1	a0003	1519	26	11	3	10	1	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	a0004	1519	24	0	10	6	0	8	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	a0005	1519	17	5	2	5	0	5	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	a0006	1519	7	0	7	0	0	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	a0007	1519	6	0	0	6	0	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	a0008	1517	5	5	0	0	0	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	a0009	1519	4	4	0	0	0	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	a0010	1519	4	3	1	0	0	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	a0011	1519	2	0	0	2	0	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	a0012	1519	2	2	0	0	0	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	a0013	1519	2	2	0	0	0	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	a0014	1519	1	0	1	0	0	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	a0015	1519	1	1	0	0	0	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	a0016	1519	1	1	0	0	0	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	a0017	1519	1	0	0	1	0	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	a0018	1519	1	0	0	1	0	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	a0019	1519	1	0	0	0	1	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	a0020	1519	1	0	0	0	0	1	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	a0021	1519	1	0	0	1	0	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	a0022	1519	1	1	0	0	0	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	a0023	1519	1	0	0	1	0	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	a0024	1519	1	0	0	1	0	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	a0025	1519	1	0	0	0	0	1	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF4_chr2_130831914_131052253	0/0	a0001	1876	58	17	9	18	2	12	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	a0002	1876	13	8	0	3	0	2	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	a0003	1876	10	9	1	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/1	a0004	1876	9	1	0	2	0	5	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	a0005	1876	9	8	1	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	a0006	1876	7	7	0	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	a0007	1876	6	4	1	0	0	1	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	a0008	1876	5	0	4	0	0	1	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	a0009	1876	4	4	0	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	a0010	1876	4	4	0	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	a0011	1876	3	3	0	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	a0012	1876	2	0	0	2	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	a0013	1876	2	2	0	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	a0014	1876	1	1	0	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	a0015	1876	1	0	1	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	1/0	a0016	1876	1	0	0	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253