JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PACC1_chr1_212358928_212419886	0/0	a0003	350	1	0	0	0	0	1	copy fasta	PACC1	chr1	212358928	212419886
PACRGL_chr4_20695458_20737557	1/1	a0001	248	403	93	72	177	15	44	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/0	a0002	248	6	0	0	6	0	0	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/0	a0003	248	1	0	0	1	0	0	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/0	a0004	248	1	1	0	0	0	0	copy fasta	PACRGL	chr4	20695458	20737557
PACRGL_chr4_20695458_20737557	0/0	a0005	248	1	0	0	0	1	0	copy fasta	PACRGL	chr4	20695458	20737557
PACRG_chr6_162722974_163320500	0/0	a0001	257	130	66	26	20	10	8	copy fasta	PACRG	chr6	162722974	163320500
PACS1_chr11_66065272_66249744	1/1	a0001	963	314	84	47	145	10	26	copy fasta	PACS1	chr11	66065272	66249744
PACS1_chr11_66065272_66249744	0/0	a0002	963	2	1	1	0	0	0	copy fasta	PACS1	chr11	66065272	66249744
PACS1_chr11_66065272_66249744	0/0	a0003	963	1	1	0	0	0	0	copy fasta	PACS1	chr11	66065272	66249744
PACS1_chr11_66065272_66249744	0/0	a0004	963	1	0	0	1	0	0	copy fasta	PACS1	chr11	66065272	66249744
PACS1_chr11_66065272_66249744	0/0	a0005	963	1	0	0	1	0	0	copy fasta	PACS1	chr11	66065272	66249744
PACS1_chr11_66065272_66249744	0/0	a0006	963	1	0	0	1	0	0	copy fasta	PACS1	chr11	66065272	66249744
PACS1_chr11_66065272_66249744	0/0	a0007	963	1	0	0	1	0	0	copy fasta	PACS1	chr11	66065272	66249744
PACS1_chr11_66065272_66249744	0/0	a0008	963	1	0	0	1	0	0	copy fasta	PACS1	chr11	66065272	66249744
PACS2_chr14_105309748_105403147	1/1	a0001	904	156	41	38	54	5	16	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	a0002	904	45	38	3	2	0	2	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	a0003	904	2	2	0	0	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	a0004	904	2	0	1	0	1	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	a0005	904	1	1	0	0	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	a0006	904	1	0	1	0	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	a0007	904	1	0	1	0	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	a0008	904	1	1	0	0	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACS2_chr14_105309748_105403147	0/0	a0009	904	1	1	0	0	0	0	copy fasta	PACS2	chr14	105309748	105403147
PACSIN1_chr6_34461076_34540223	1/1	a0001	444	300	92	54	118	7	27	copy fasta	PACSIN1	chr6	34461076	34540223
PACSIN1_chr6_34461076_34540223	0/0	a0002	444	9	2	0	1	3	3	copy fasta	PACSIN1	chr6	34461076	34540223
PACSIN1_chr6_34461076_34540223	0/0	a0003	444	1	0	0	1	0	0	copy fasta	PACSIN1	chr6	34461076	34540223
PACSIN2_chr22_42864773_43020149	1/1	a0001	486	280	78	56	92	16	36	copy fasta	PACSIN2	chr22	42864773	43020149
PACSIN2_chr22_42864773_43020149	0/0	a0002	486	10	9	1	0	0	0	copy fasta	PACSIN2	chr22	42864773	43020149
PACSIN2_chr22_42864773_43020149	0/0	a0003	486	2	0	0	0	0	2	copy fasta	PACSIN2	chr22	42864773	43020149
PACSIN2_chr22_42864773_43020149	0/0	a0004	486	1	1	0	0	0	0	copy fasta	PACSIN2	chr22	42864773	43020149
PACSIN2_chr22_42864773_43020149	0/0	a0005	486	1	0	1	0	0	0	copy fasta	PACSIN2	chr22	42864773	43020149
PACSIN3_chr11_47172522_47191434	1/1	a0001	424	324	51	74	140	10	47	copy fasta	PACSIN3	chr11	47172522	47191434
PACSIN3_chr11_47172522_47191434	0/0	a0002	424	35	32	3	0	0	0	copy fasta	PACSIN3	chr11	47172522	47191434
PACSIN3_chr11_47172522_47191434	0/0	a0003	424	3	3	0	0	0	0	copy fasta	PACSIN3	chr11	47172522	47191434
PACSIN3_chr11_47172522_47191434	0/0	a0004	424	1	0	0	0	0	1	copy fasta	PACSIN3	chr11	47172522	47191434
PACSIN3_chr11_47172522_47191434	0/0	a0005	424	1	0	1	0	0	0	copy fasta	PACSIN3	chr11	47172522	47191434
PADI1_chr1_17200128_17251007	1/1	a0001	663	379	84	72	158	16	47	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	a0002	663	9	7	2	0	0	0	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	a0003	663	4	0	1	3	0	0	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	a0004	663	2	0	0	2	0	0	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	a0005	663	2	2	0	0	0	0	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	a0006	663	2	0	0	2	0	0	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	a0007	663	1	1	0	0	0	0	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	a0008	663	1	1	0	0	0	0	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	a0009	663	1	0	0	1	0	0	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	a0010	663	1	0	0	0	0	1	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	a0011	663	1	0	1	0	0	0	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	a0012	663	1	1	0	0	0	0	copy fasta	PADI1	chr1	17200128	17251007
PADI1_chr1_17200128_17251007	0/0	a0013	663	1	1	0	0	0	0	copy fasta	PADI1	chr1	17200128	17251007