JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PECR_chr2_216033388_216086809	0/0	a0007	303	2	1	0	0	0	1	copy fasta	PECR	chr2	216033388	216086809
PECR_chr2_216033388_216086809	0/0	a0008	303	1	0	0	0	0	1	copy fasta	PECR	chr2	216033388	216086809
PECR_chr2_216033388_216086809	0/0	a0009	303	1	0	0	1	0	0	copy fasta	PECR	chr2	216033388	216086809
PECR_chr2_216033388_216086809	0/0	a0010	303	1	0	0	0	1	0	copy fasta	PECR	chr2	216033388	216086809
PECR_chr2_216033388_216086809	0/0	a0011	11	1	0	1	0	0	0	copy fasta	PECR	chr2	216033388	216086809
PEDS1_chr20_50113254_50158723	0/1	a0001	270	321	50	63	152	14	41	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	a0002	270	44	34	5	4	0	1	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	1/0	a0003	270	1	0	0	0	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEF1_chr1_31624866_31649876	1/1	a0001	284	346	78	66	146	12	42	copy fasta	PEF1	chr1	31624866	31649876
PEG3_chr19_56805082_56845726	1/1	a0001	1588	235	61	46	85	8	33	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	a0002	1588	91	4	19	53	4	11	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	a0003	1588	28	0	0	28	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	a0004	1588	6	5	1	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	a0005	1588	5	0	0	5	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	a0006	1588	4	0	0	4	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	a0007	1588	4	3	1	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	a0008	1588	4	4	0	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	a0009	1588	4	4	0	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	a0010	1588	3	0	0	0	3	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	a0011	106	2	0	0	2	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	a0012	1588	2	2	0	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	a0013	1588	2	2	0	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	a0014	1588	2	0	2	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	a0015	1595	2	0	0	0	0	2	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	a0016	1588	2	0	2	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	a0017	1588	1	0	0	1	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	a0018	1588	1	0	0	1	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	a0019	1588	1	1	0	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	a0020	1588	1	0	1	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	a0021	1588	1	1	0	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	a0022	1588	1	0	1	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	a0023	1588	1	0	0	1	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	a0024	1588	1	0	0	1	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	a0025	1588	1	0	0	1	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	a0026	1588	1	0	1	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	a0027	1588	1	1	0	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	a0028	1588	1	0	1	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	a0029	1588	1	1	0	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	a0030	1588	1	1	0	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	a0031	1588	1	1	0	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	a0032	1588	1	0	0	1	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	a0033	1588	1	1	0	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	a0034	1588	1	0	0	0	1	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	a0035	1588	1	0	0	1	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	a0036	15	1	0	1	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PELI1_chr2_64087652_64149420	1/1	a0001	418	304	84	62	106	8	42	copy fasta	PELI1	chr2	64087652	64149420
PELI2_chr14_56113411_56306524	1/1	a0001	420	363	84	64	155	18	40	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	a0002	420	4	0	0	4	0	0	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	a0003	420	1	0	0	1	0	0	copy fasta	PELI2	chr14	56113411	56306524
PELI3_chr11_66461905_66482337	1/1	a0001	469	393	93	75	177	14	32	copy fasta	PELI3	chr11	66461905	66482337