JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PGGHG_chr11_284126_301107	0/0	a0008	737	1	1	0	0	0	0	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	a0009	737	1	1	0	0	0	0	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	a0010	737	1	0	0	1	0	0	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	a0011	737	1	0	1	0	0	0	copy fasta	PGGHG	chr11	284126	301107
PGGT1B_chr5_115199012_115267877	1/1	a0001	377	367	85	74	150	16	40	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	a0002	377	4	3	1	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	a0003	377	1	0	1	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGK1_chrX_78099248_78134295	1/1	a0001	417	304	72	51	140	8	31	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	a0002	258	1	0	0	1	0	0	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	a0003	417	1	0	1	0	0	0	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	a0004	417	1	0	0	0	0	1	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	a0005	417	1	0	0	0	1	0	copy fasta	PGK1	chrX	78099248	78134295
PGK2_chr6_49780660_49792285	1/1	a0001	417	399	94	74	166	17	46	copy fasta	PGK2	chr6	49780660	49792285
PGK2_chr6_49780660_49792285	0/0	a0002	417	3	2	0	1	0	0	copy fasta	PGK2	chr6	49780660	49792285
PGK2_chr6_49780660_49792285	0/0	a0003	417	1	0	1	0	0	0	copy fasta	PGK2	chr6	49780660	49792285
PGK2_chr6_49780660_49792285	0/0	a0004	417	1	0	0	1	0	0	copy fasta	PGK2	chr6	49780660	49792285
PGK2_chr6_49780660_49792285	0/0	a0005	417	1	0	1	0	0	0	copy fasta	PGK2	chr6	49780660	49792285
PGK2_chr6_49780660_49792285	0/0	a0006	417	1	0	0	0	1	0	copy fasta	PGK2	chr6	49780660	49792285
PGLS_chr19_17506649_17526288	1/1	a0001	258	436	92	78	198	18	48	copy fasta	PGLS	chr19	17506649	17526288
PGLS_chr19_17506649_17526288	0/0	a0002	258	3	3	0	0	0	0	copy fasta	PGLS	chr19	17506649	17526288
PGLS_chr19_17506649_17526288	0/0	a0003	258	1	0	0	1	0	0	copy fasta	PGLS	chr19	17506649	17526288
PGLS_chr19_17506649_17526288	0/0	a0004	258	1	1	0	0	0	0	copy fasta	PGLS	chr19	17506649	17526288
PGLS_chr19_17506649_17526288	0/0	a0005	258	1	0	0	1	0	0	copy fasta	PGLS	chr19	17506649	17526288
PGLYRP1_chr19_46014153_46028053	1/1	a0001	196	441	88	80	205	18	48	copy fasta	PGLYRP1	chr19	46014153	46028053
PGLYRP1_chr19_46014153_46028053	0/0	a0002	196	10	0	0	10	0	0	copy fasta	PGLYRP1	chr19	46014153	46028053
PGLYRP1_chr19_46014153_46028053	0/0	a0003	196	2	2	0	0	0	0	copy fasta	PGLYRP1	chr19	46014153	46028053
PGLYRP1_chr19_46014153_46028053	0/0	a0004	196	2	2	0	0	0	0	copy fasta	PGLYRP1	chr19	46014153	46028053
PGLYRP1_chr19_46014153_46028053	0/0	a0005	196	1	0	0	1	0	0	copy fasta	PGLYRP1	chr19	46014153	46028053
PGLYRP2_chr19_15463645_15484501	1/1	a0001	576	211	41	41	91	8	28	copy fasta	PGLYRP2	chr19	15463645	15484501
PGLYRP2_chr19_15463645_15484501	0/0	a0002	576	66	9	12	40	2	3	copy fasta	PGLYRP2	chr19	15463645	15484501
PGLYRP2_chr19_15463645_15484501	0/0	a0003	576	41	15	8	9	5	4	copy fasta	PGLYRP2	chr19	15463645	15484501
PGLYRP2_chr19_15463645_15484501	0/0	a0004	576	18	1	8	3	3	3	copy fasta	PGLYRP2	chr19	15463645	15484501
PGLYRP2_chr19_15463645_15484501	0/0	a0005	576	15	15	0	0	0	0	copy fasta	PGLYRP2	chr19	15463645	15484501
PGLYRP2_chr19_15463645_15484501	0/0	a0006	576	5	5	0	0	0	0	copy fasta	PGLYRP2	chr19	15463645	15484501
PGLYRP2_chr19_15463645_15484501	0/0	a0007	576	5	2	0	0	0	3	copy fasta	PGLYRP2	chr19	15463645	15484501
PGLYRP2_chr19_15463645_15484501	0/0	a0008	576	5	5	0	0	0	0	copy fasta	PGLYRP2	chr19	15463645	15484501
PGLYRP2_chr19_15463645_15484501	0/0	a0009	576	3	3	0	0	0	0	copy fasta	PGLYRP2	chr19	15463645	15484501
PGLYRP2_chr19_15463645_15484501	0/0	a0010	576	2	0	0	2	0	0	copy fasta	PGLYRP2	chr19	15463645	15484501
PGLYRP2_chr19_15463645_15484501	0/0	a0011	576	2	2	0	0	0	0	copy fasta	PGLYRP2	chr19	15463645	15484501
PGLYRP2_chr19_15463645_15484501	0/0	a0012	576	1	0	0	1	0	0	copy fasta	PGLYRP2	chr19	15463645	15484501
PGLYRP2_chr19_15463645_15484501	0/0	a0013	576	1	0	1	0	0	0	copy fasta	PGLYRP2	chr19	15463645	15484501
PGLYRP2_chr19_15463645_15484501	0/0	a0014	576	1	1	0	0	0	0	copy fasta	PGLYRP2	chr19	15463645	15484501
PGLYRP2_chr19_15463645_15484501	0/0	a0015	576	1	1	0	0	0	0	copy fasta	PGLYRP2	chr19	15463645	15484501
PGLYRP2_chr19_15463645_15484501	0/0	a0016	576	1	0	1	0	0	0	copy fasta	PGLYRP2	chr19	15463645	15484501
PGLYRP2_chr19_15463645_15484501	0/0	a0017	576	1	0	0	0	0	1	copy fasta	PGLYRP2	chr19	15463645	15484501
PGLYRP2_chr19_15463645_15484501	0/0	a0018	576	1	0	1	0	0	0	copy fasta	PGLYRP2	chr19	15463645	15484501
PGLYRP2_chr19_15463645_15484501	0/0	a0019	382	1	0	0	1	0	0	copy fasta	PGLYRP2	chr19	15463645	15484501
PGLYRP2_chr19_15463645_15484501	0/0	a0020	576	1	0	0	1	0	0	copy fasta	PGLYRP2	chr19	15463645	15484501
PGLYRP3_chr1_153292116_153317952	0/1	a0001	341	203	32	37	104	9	20	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	1/0	a0002	341	169	50	33	55	6	24	copy fasta	PGLYRP3	chr1	153292116	153317952