JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PLIN1_chr15_89659367_89684367	0/0	a0014	522	1	0	0	0	0	1	copy fasta	PLIN1	chr15	89659367	89684367
PLIN2_chr9_19110761_19132492	1/0	a0001	437	430	85	68	215	15	46	copy fasta	PLIN2	chr9	19110761	19132492
PLIN2_chr9_19110761_19132492	0/1	a0002	437	8	1	2	0	2	2	copy fasta	PLIN2	chr9	19110761	19132492
PLIN2_chr9_19110761_19132492	0/0	a0003	437	3	2	1	0	0	0	copy fasta	PLIN2	chr9	19110761	19132492
PLIN2_chr9_19110761_19132492	0/0	a0004	437	1	1	0	0	0	0	copy fasta	PLIN2	chr9	19110761	19132492
PLIN2_chr9_19110761_19132492	0/0	a0005	437	1	0	0	1	0	0	copy fasta	PLIN2	chr9	19110761	19132492
PLIN2_chr9_19110761_19132492	0/0	a0006	437	1	0	0	1	0	0	copy fasta	PLIN2	chr9	19110761	19132492
PLIN2_chr9_19110761_19132492	0/0	a0007	437	1	0	0	1	0	0	copy fasta	PLIN2	chr9	19110761	19132492
PLIN2_chr9_19110761_19132492	0/0	a0008	437	1	1	0	0	0	0	copy fasta	PLIN2	chr9	19110761	19132492
PLIN2_chr9_19110761_19132492	0/0	a0009	437	1	0	0	0	1	0	copy fasta	PLIN2	chr9	19110761	19132492
PLIN2_chr9_19110761_19132492	0/0	a0010	437	1	0	1	0	0	0	copy fasta	PLIN2	chr9	19110761	19132492
PLIN3_chr19_4833341_4872667	0/1	a0001	434	225	51	45	95	10	23	copy fasta	PLIN3	chr19	4833341	4872667
PLIN3_chr19_4833341_4872667	0/0	a0002	434	157	34	26	78	5	14	copy fasta	PLIN3	chr19	4833341	4872667
PLIN3_chr19_4833341_4872667	0/0	a0003	434	53	10	5	28	0	10	copy fasta	PLIN3	chr19	4833341	4872667
PLIN3_chr19_4833341_4872667	0/0	a0004	434	5	0	3	0	1	1	copy fasta	PLIN3	chr19	4833341	4872667
PLIN3_chr19_4833341_4872667	0/0	a0005	434	2	0	2	0	0	0	copy fasta	PLIN3	chr19	4833341	4872667
PLIN3_chr19_4833341_4872667	0/0	a0006	434	1	0	1	0	0	0	copy fasta	PLIN3	chr19	4833341	4872667
PLIN3_chr19_4833341_4872667	1/0	a0007	434	1	0	0	0	0	0	copy fasta	PLIN3	chr19	4833341	4872667
PLIN3_chr19_4833341_4872667	0/0	a0008	434	1	0	0	1	0	0	copy fasta	PLIN3	chr19	4833341	4872667
PLIN3_chr19_4833341_4872667	0/0	a0009	434	1	1	0	0	0	0	copy fasta	PLIN3	chr19	4833341	4872667
PLIN4_chr19_4497192_4523486	0/1	a0001	1437	99	4	21	60	4	9	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	a0002	1437	40	1	15	17	1	6	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	a0003	1437	23	1	4	13	2	3	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	a0004	1404	16	0	0	16	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	a0005	1437	14	1	0	5	3	5	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	a0006	1404	13	3	4	6	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	a0007	1206	8	8	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	a0008	1437	6	0	0	1	1	4	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	a0009	1338	6	6	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	a0010	1338	6	0	6	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	a0011	1437	5	0	0	5	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	a0012	1437	5	0	1	4	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	a0013	1404	5	5	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	a0014	1239	5	3	1	0	0	1	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	a0015	1305	5	5	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	a0016	1371	5	0	1	3	0	1	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	a0017	1404	4	0	3	0	0	1	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	a0018	1437	4	0	0	3	0	1	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	a0019	1305	4	0	0	4	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	a0020	1437	4	0	1	1	0	2	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	a0021	1437	4	0	1	1	0	2	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	a0022	1437	4	0	0	4	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	a0023	1305	4	4	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	a0024	1437	3	0	0	1	1	1	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	a0025	1206	3	3	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	a0026	1272	3	3	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	a0027	1437	3	0	1	0	0	2	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	a0028	1404	2	0	0	0	2	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	a0029	1503	2	0	0	2	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	a0030	1437	2	0	1	1	0	0	copy fasta	PLIN4	chr19	4497192	4523486