JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PLXDC2_chr10_19811432_20294856	1/0	a0003	529	23	0	8	8	0	6	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	a0004	529	7	3	1	1	1	1	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	a0005	529	3	3	0	0	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	a0006	529	1	0	1	0	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXNA1_chr3_126978115_127042389	0/0	a0000	0	1	0	0	1	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	1/1	a0001	1896	336	88	56	144	12	34	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	a0002	1896	2	0	0	2	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	a0003	1896	1	1	0	0	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	a0004	1896	1	0	0	0	0	1	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	a0005	1896	1	1	0	0	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	a0006	1896	1	0	0	1	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	a0007	1896	1	0	0	0	0	1	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	a0008	1896	1	0	0	1	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	a0009	1896	1	0	0	1	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA2_chr1_208017242_208249384	0/1	a0001	1894	96	23	15	41	3	13	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	1/0	a0002	1894	87	36	14	26	2	8	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	a0003	1894	34	2	11	18	1	2	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	a0004	1894	25	2	3	14	3	3	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	a0005	1894	17	2	1	9	1	4	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	a0006	1894	9	9	0	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	a0007	1894	9	0	0	9	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	a0008	1894	7	0	3	4	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	a0009	1894	6	0	2	3	0	1	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	a0010	1894	4	4	0	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	a0011	1894	3	1	1	1	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	a0012	1894	1	1	0	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	a0013	1894	1	1	0	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	a0014	1894	1	0	1	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	a0015	1894	1	1	0	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	a0016	1894	1	1	0	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	a0017	1894	1	1	0	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	a0018	1894	1	1	0	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	a0019	1894	1	0	1	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	a0020	1894	1	1	0	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	a0021	1894	1	0	0	0	0	1	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	a0022	1894	1	0	1	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	a0023	1894	1	0	1	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	a0024	1894	1	0	0	1	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	a0025	1894	1	0	0	1	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	a0026	1894	1	0	0	1	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA3_chrX_154453281_154482779	0/0	a0000	0	1	0	0	1	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/1	a0001	1871	144	6	34	80	9	14	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	1/0	a0002	1871	92	59	7	11	1	13	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	a0003	132	2	1	0	1	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	a0004	1871	2	0	1	0	1	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	a0005	1871	1	1	0	0	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	a0006	40	1	0	0	1	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	a0007	132	1	0	0	1	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	a0008	1871	1	1	0	0	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	a0009	1871	1	0	1	0	0	0	copy fasta	PLXNA3	chrX	154453281	154482779