JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PLXNA3_chrX_154453281_154482779	0/0	a0010	188	1	0	0	1	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	a0011	1871	1	1	0	0	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	a0012	1871	1	1	0	0	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	a0013	772	1	0	0	1	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	a0014	1080	1	0	0	1	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	a0015	1871	1	1	0	0	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	a0016	1871	1	1	0	0	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	a0017	1871	1	1	0	0	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	a0018	1871	1	0	0	1	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	a0019	1871	1	1	0	0	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	a0020	1871	1	0	1	0	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	a0021	1871	1	0	0	1	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	a0022	1871	1	0	0	0	0	1	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	a0023	1871	1	0	1	0	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	a0024	1871	1	0	0	1	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	a0025	54	1	0	1	0	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA4_chr7_132118340_132581470	1/1	a0001	1894	84	30	21	14	2	15	copy fasta	PLXNA4	chr7	132118340	132581470
PLXNA4_chr7_132118340_132581470	0/0	a0002	1894	1	1	0	0	0	0	copy fasta	PLXNA4	chr7	132118340	132581470
PLXNA4_chr7_132118340_132581470	0/0	a0003	1894	1	0	1	0	0	0	copy fasta	PLXNA4	chr7	132118340	132581470
PLXNA4_chr7_132118340_132581470	0/0	a0004	1894	1	0	0	0	0	1	copy fasta	PLXNA4	chr7	132118340	132581470
PLXNA4_chr7_132118340_132581470	0/0	a0005	1894	1	1	0	0	0	0	copy fasta	PLXNA4	chr7	132118340	132581470
PLXNB1_chr3_48398854_48435086	1/1	a0001	2135	280	63	52	122	14	27	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	a0002	2135	7	7	0	0	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	a0003	2135	7	5	2	0	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	a0004	2135	4	0	4	0	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	a0005	2135	2	0	2	0	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	a0006	2135	1	1	0	0	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	a0007	2135	1	1	0	0	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	a0008	2135	1	1	0	0	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	a0009	2135	1	0	0	1	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	a0010	2135	1	0	0	1	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	a0011	2135	1	0	0	1	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	a0012	2135	1	0	0	0	0	1	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	a0013	2135	1	0	1	0	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	a0014	2135	1	0	0	1	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	a0015	2135	1	0	1	0	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	a0016	2135	1	0	1	0	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	a0017	2084	1	0	0	1	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	a0018	2135	1	0	0	1	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	a0019	2135	1	1	0	0	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	a0020	2135	1	1	0	0	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	a0021	2135	1	0	1	0	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	a0022	2135	1	1	0	0	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	a0023	2135	1	1	0	0	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB2_chr22_50269979_50312646	0/0	a0001	1838	86	10	22	28	5	21	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	a0002	1838	77	41	3	29	1	3	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	1/1	a0003	1838	51	9	15	21	1	3	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	a0004	1838	37	9	2	21	1	4	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	a0005	1838	6	0	0	4	1	1	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	a0006	1838	6	0	5	0	0	1	copy fasta	PLXNB2	chr22	50269979	50312646