JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PMEPA1_chr20_57643396_57715015	0/0	a0002	287	31	26	3	0	1	1	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	a0003	287	1	0	0	0	0	1	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	a0004	287	1	0	0	0	0	1	copy fasta	PMEPA1	chr20	57643396	57715015
PMF1_chr1_156208007_156245042	1/1	a0001	205	189	22	44	90	6	25	copy fasta	PMF1	chr1	156208007	156245042
PMF1_chr1_156208007_156245042	0/0	a0002	205	91	51	7	24	0	9	copy fasta	PMF1	chr1	156208007	156245042
PMF1_chr1_156208007_156245042	0/0	a0003	205	73	9	13	42	4	5	copy fasta	PMF1	chr1	156208007	156245042
PMF1_chr1_156208007_156245042	0/0	a0004	205	4	1	3	0	0	0	copy fasta	PMF1	chr1	156208007	156245042
PMF1_chr1_156208007_156245042	0/0	a0005	205	3	0	3	0	0	0	copy fasta	PMF1	chr1	156208007	156245042
PMF1_chr1_156208007_156245042	0/0	a0006	56	1	0	0	1	0	0	copy fasta	PMF1	chr1	156208007	156245042
PMF1_chr1_156208007_156245042	0/0	a0007	205	1	0	0	1	0	0	copy fasta	PMF1	chr1	156208007	156245042
PMF1_chr1_156208007_156245042	0/0	a0008	205	1	0	0	0	0	1	copy fasta	PMF1	chr1	156208007	156245042
PMF1_chr1_156208007_156245042	0/0	a0009	205	1	1	0	0	0	0	copy fasta	PMF1	chr1	156208007	156245042
PMFBP1_chr16_72114097_72177155	1/0	a0001	1007	135	24	27	64	7	12	copy fasta	PMFBP1	chr16	72114097	72177155
PMFBP1_chr16_72114097_72177155	0/1	a0002	1007	126	46	9	56	3	11	copy fasta	PMFBP1	chr16	72114097	72177155
PMFBP1_chr16_72114097_72177155	0/0	a0003	1007	34	0	7	20	1	6	copy fasta	PMFBP1	chr16	72114097	72177155
PMFBP1_chr16_72114097_72177155	0/0	a0004	1007	29	1	9	7	2	10	copy fasta	PMFBP1	chr16	72114097	72177155
PMFBP1_chr16_72114097_72177155	0/0	a0005	1007	5	0	0	5	0	0	copy fasta	PMFBP1	chr16	72114097	72177155
PMFBP1_chr16_72114097_72177155	0/0	a0006	1006	3	3	0	0	0	0	copy fasta	PMFBP1	chr16	72114097	72177155
PMFBP1_chr16_72114097_72177155	0/0	a0007	1007	2	1	0	0	1	0	copy fasta	PMFBP1	chr16	72114097	72177155
PMFBP1_chr16_72114097_72177155	0/0	a0008	1007	1	0	0	1	0	0	copy fasta	PMFBP1	chr16	72114097	72177155
PMFBP1_chr16_72114097_72177155	0/0	a0009	1007	1	0	0	1	0	0	copy fasta	PMFBP1	chr16	72114097	72177155
PMFBP1_chr16_72114097_72177155	0/0	a0010	1007	1	0	0	1	0	0	copy fasta	PMFBP1	chr16	72114097	72177155
PMFBP1_chr16_72114097_72177155	0/0	a0011	1007	1	0	0	1	0	0	copy fasta	PMFBP1	chr16	72114097	72177155
PMFBP1_chr16_72114097_72177155	0/0	a0012	1007	1	0	0	1	0	0	copy fasta	PMFBP1	chr16	72114097	72177155
PMFBP1_chr16_72114097_72177155	0/0	a0013	1007	1	0	0	1	0	0	copy fasta	PMFBP1	chr16	72114097	72177155
PMFBP1_chr16_72114097_72177155	0/0	a0014	1007	1	1	0	0	0	0	copy fasta	PMFBP1	chr16	72114097	72177155
PMFBP1_chr16_72114097_72177155	0/0	a0015	1007	1	0	1	0	0	0	copy fasta	PMFBP1	chr16	72114097	72177155
PMFBP1_chr16_72114097_72177155	0/0	a0016	240	1	0	1	0	0	0	copy fasta	PMFBP1	chr16	72114097	72177155
PMFBP1_chr16_72114097_72177155	0/0	a0017	1007	1	0	0	0	0	1	copy fasta	PMFBP1	chr16	72114097	72177155
PMIS2_chr19_35581173_35592296	1/1	a0001	150	267	66	53	105	8	33	copy fasta	PMIS2	chr19	35581173	35592296
PMIS2_chr19_35581173_35592296	0/0	a0002	150	104	28	20	39	3	14	copy fasta	PMIS2	chr19	35581173	35592296
PMIS2_chr19_35581173_35592296	0/0	a0003	62	72	2	11	57	1	1	copy fasta	PMIS2	chr19	35581173	35592296
PMIS2_chr19_35581173_35592296	0/0	a0004	150	1	0	0	1	0	0	copy fasta	PMIS2	chr19	35581173	35592296
PML_chr15_73989716_74052827	1/0	a0001	882	281	70	36	133	9	32	copy fasta	PML	chr15	73989716	74052827
PML_chr15_73989716_74052827	0/1	a0002	882	33	0	20	1	5	6	copy fasta	PML	chr15	73989716	74052827
PML_chr15_73989716_74052827	0/0	a0003	414	20	5	7	7	0	1	copy fasta	PML	chr15	73989716	74052827
PML_chr15_73989716_74052827	0/0	a0004	882	1	1	0	0	0	0	copy fasta	PML	chr15	73989716	74052827
PML_chr15_73989716_74052827	0/0	a0005	882	1	0	1	0	0	0	copy fasta	PML	chr15	73989716	74052827
PML_chr15_73989716_74052827	0/0	a0006	882	1	0	1	0	0	0	copy fasta	PML	chr15	73989716	74052827
PML_chr15_73989716_74052827	0/0	a0007	882	1	0	0	0	0	1	copy fasta	PML	chr15	73989716	74052827
PML_chr15_73989716_74052827	0/0	a0008	882	1	0	0	1	0	0	copy fasta	PML	chr15	73989716	74052827
PML_chr15_73989716_74052827	0/0	a0009	882	1	1	0	0	0	0	copy fasta	PML	chr15	73989716	74052827
PML_chr15_73989716_74052827	0/0	a0010	882	1	1	0	0	0	0	copy fasta	PML	chr15	73989716	74052827
PML_chr15_73989716_74052827	0/0	a0011	882	1	0	1	0	0	0	copy fasta	PML	chr15	73989716	74052827
PMM1_chr22_41571900_41594840	1/1	a0001	262	327	83	60	134	14	34	copy fasta	PMM1	chr22	41571900	41594840
PMM1_chr22_41571900_41594840	0/0	a0002	262	2	0	2	0	0	0	copy fasta	PMM1	chr22	41571900	41594840
PMM1_chr22_41571900_41594840	0/0	a0003	262	1	1	0	0	0	0	copy fasta	PMM1	chr22	41571900	41594840
PMM2_chr16_8792839_8854325	1/1	a0001	246	390	97	71	169	13	38	copy fasta	PMM2	chr16	8792839	8854325
PMM2_chr16_8792839_8854325	0/0	a0002	246	5	1	4	0	0	0	copy fasta	PMM2	chr16	8792839	8854325
PMM2_chr16_8792839_8854325	0/0	a0003	246	4	0	0	4	0	0	copy fasta	PMM2	chr16	8792839	8854325