JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PRPS2_chrX_12786412_12829222	1/1	a0001	318	334	78	60	151	9	34	copy fasta	PRPS2	chrX	12786412	12829222
PRPSAP1_chr17_76304478_76358916	1/1	a0001	385	365	91	66	146	16	44	copy fasta	PRPSAP1	chr17	76304478	76358916
PRPSAP1_chr17_76304478_76358916	0/0	a0002	176	1	1	0	0	0	0	copy fasta	PRPSAP1	chr17	76304478	76358916
PRPSAP2_chr17_18853131_18936287	1/1	a0001	369	392	92	80	164	12	42	copy fasta	PRPSAP2	chr17	18853131	18936287
PRR11_chr17_59150746_59211709	1/1	a0001	360	283	72	59	108	10	32	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	a0002	360	3	2	1	0	0	0	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	a0003	360	1	1	0	0	0	0	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	a0004	360	1	1	0	0	0	0	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	a0005	360	1	0	0	0	0	1	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	a0006	360	1	0	0	0	0	1	copy fasta	PRR11	chr17	59150746	59211709
PRR12_chr19_49586182_49631439	1/1	a0001	2036	279	76	54	98	12	37	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	a0002	2036	12	3	4	0	0	5	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	a0003	935	7	1	3	3	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	a0004	935	2	1	1	0	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	a0005	2036	2	2	0	0	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	a0006	2036	2	0	2	0	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	a0007	2036	1	0	0	0	0	1	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	a0008	2036	1	0	0	1	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	a0009	2036	1	0	0	0	0	1	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	a0010	2036	1	0	0	0	0	1	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	a0011	2036	1	1	0	0	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	a0012	2036	1	0	0	1	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	a0013	2036	1	1	0	0	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	a0014	2036	1	1	0	0	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	a0015	2036	1	1	0	0	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	a0016	2036	1	0	0	1	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	a0017	2036	1	0	0	0	0	1	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	a0018	2036	1	0	0	1	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	a0019	2036	1	1	0	0	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	a0020	2036	1	0	0	1	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	a0021	2036	1	0	0	1	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	a0022	2036	1	1	0	0	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	a0023	2036	1	1	0	0	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	a0024	2036	1	0	0	1	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR13_chr12_53436734_53451638	1/1	a0001	148	386	90	70	162	16	46	copy fasta	PRR13	chr12	53436734	53451638
PRR13_chr12_53436734_53451638	0/0	a0002	148	1	0	0	1	0	0	copy fasta	PRR13	chr12	53436734	53451638
PRR13_chr12_53436734_53451638	0/0	a0003	148	1	0	0	1	0	0	copy fasta	PRR13	chr12	53436734	53451638
PRR14L_chr22_31676347_31755132	1/0	a0001	2151	145	13	27	71	10	23	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/1	a0002	2151	48	15	6	16	3	7	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	a0003	2151	12	0	5	6	0	1	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	a0004	2151	11	4	6	1	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	a0005	2151	11	9	2	0	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	a0006	2151	10	0	0	10	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	a0007	2151	10	8	2	0	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	a0008	2151	10	5	2	0	0	3	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	a0009	2151	7	7	0	0	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	a0010	2151	4	4	0	0	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	a0011	2151	3	0	2	0	0	1	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	a0012	2151	3	0	0	2	0	1	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	a0013	2151	3	0	0	3	0	0	copy fasta	PRR14L	chr22	31676347	31755132