JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PRSS36_chr16_31133926_31155066	0/0	a0012	855	1	1	0	0	0	0	copy fasta	PRSS36	chr16	31133926	31155066
PRSS37_chr7_141831300_141846485	0/0	a0001	235	250	31	44	142	8	25	copy fasta	PRSS37	chr7	141831300	141846485
PRSS37_chr7_141831300_141846485	1/1	a0002	235	154	57	23	49	10	13	copy fasta	PRSS37	chr7	141831300	141846485
PRSS37_chr7_141831300_141846485	0/0	a0003	252	1	0	0	1	0	0	copy fasta	PRSS37	chr7	141831300	141846485
PRSS37_chr7_141831300_141846485	0/0	a0004	235	1	0	1	0	0	0	copy fasta	PRSS37	chr7	141831300	141846485
PRSS37_chr7_141831300_141846485	0/0	a0005	235	1	1	0	0	0	0	copy fasta	PRSS37	chr7	141831300	141846485
PRSS37_chr7_141831300_141846485	0/0	a0006	235	1	1	0	0	0	0	copy fasta	PRSS37	chr7	141831300	141846485
PRSS38_chr1_227810675_227851470	0/0	a0001	326	207	39	37	86	8	37	copy fasta	PRSS38	chr1	227810675	227851470
PRSS38_chr1_227810675_227851470	1/1	a0002	326	107	25	19	54	3	4	copy fasta	PRSS38	chr1	227810675	227851470
PRSS38_chr1_227810675_227851470	0/0	a0003	326	57	0	15	31	4	7	copy fasta	PRSS38	chr1	227810675	227851470
PRSS38_chr1_227810675_227851470	0/0	a0004	326	30	0	1	27	2	0	copy fasta	PRSS38	chr1	227810675	227851470
PRSS38_chr1_227810675_227851470	0/0	a0005	326	10	9	1	0	0	0	copy fasta	PRSS38	chr1	227810675	227851470
PRSS38_chr1_227810675_227851470	0/0	a0006	326	8	8	0	0	0	0	copy fasta	PRSS38	chr1	227810675	227851470
PRSS38_chr1_227810675_227851470	0/0	a0007	326	6	4	2	0	0	0	copy fasta	PRSS38	chr1	227810675	227851470
PRSS38_chr1_227810675_227851470	0/0	a0008	326	5	0	0	5	0	0	copy fasta	PRSS38	chr1	227810675	227851470
PRSS38_chr1_227810675_227851470	0/0	a0009	326	4	4	0	0	0	0	copy fasta	PRSS38	chr1	227810675	227851470
PRSS38_chr1_227810675_227851470	0/0	a0010	326	3	3	0	0	0	0	copy fasta	PRSS38	chr1	227810675	227851470
PRSS38_chr1_227810675_227851470	0/0	a0011	326	3	0	2	0	1	0	copy fasta	PRSS38	chr1	227810675	227851470
PRSS38_chr1_227810675_227851470	0/0	a0012	326	1	1	0	0	0	0	copy fasta	PRSS38	chr1	227810675	227851470
PRSS38_chr1_227810675_227851470	0/0	a0013	326	1	1	0	0	0	0	copy fasta	PRSS38	chr1	227810675	227851470
PRSS38_chr1_227810675_227851470	0/0	a0014	326	1	0	0	1	0	0	copy fasta	PRSS38	chr1	227810675	227851470
PRSS38_chr1_227810675_227851470	0/0	a0015	326	1	1	0	0	0	0	copy fasta	PRSS38	chr1	227810675	227851470
PRSS38_chr1_227810675_227851470	0/0	a0016	326	1	1	0	0	0	0	copy fasta	PRSS38	chr1	227810675	227851470
PRSS38_chr1_227810675_227851470	0/0	a0017	326	1	0	0	1	0	0	copy fasta	PRSS38	chr1	227810675	227851470
PRSS38_chr1_227810675_227851470	0/0	a0018	326	1	0	0	1	0	0	copy fasta	PRSS38	chr1	227810675	227851470
PRSS38_chr1_227810675_227851470	0/0	a0019	326	1	0	0	1	0	0	copy fasta	PRSS38	chr1	227810675	227851470
PRSS38_chr1_227810675_227851470	0/0	a0020	326	1	0	0	1	0	0	copy fasta	PRSS38	chr1	227810675	227851470
PRSS38_chr1_227810675_227851470	0/0	a0021	326	1	0	1	0	0	0	copy fasta	PRSS38	chr1	227810675	227851470
PRSS3_chr9_33790561_33804231	0/1	a0001	247	352	75	62	169	12	33	copy fasta	PRSS3	chr9	33790561	33804231
PRSS3_chr9_33790561_33804231	0/0	a0002	246	67	6	20	22	6	13	copy fasta	PRSS3	chr9	33790561	33804231
PRSS3_chr9_33790561_33804231	1/0	a0003	247	4	3	0	0	0	0	copy fasta	PRSS3	chr9	33790561	33804231
PRSS3_chr9_33790561_33804231	0/0	a0004	247	1	0	0	1	0	0	copy fasta	PRSS3	chr9	33790561	33804231
PRSS41_chr16_2793470_2810304	1/1	a0001	305	368	72	66	174	13	41	copy fasta	PRSS41	chr16	2793470	2810304
PRSS41_chr16_2793470_2810304	0/0	a0002	305	28	4	4	20	0	0	copy fasta	PRSS41	chr16	2793470	2810304
PRSS41_chr16_2793470_2810304	0/0	a0003	305	10	10	0	0	0	0	copy fasta	PRSS41	chr16	2793470	2810304
PRSS41_chr16_2793470_2810304	0/0	a0004	305	6	5	1	0	0	0	copy fasta	PRSS41	chr16	2793470	2810304
PRSS41_chr16_2793470_2810304	0/0	a0005	305	3	3	0	0	0	0	copy fasta	PRSS41	chr16	2793470	2810304
PRSS41_chr16_2793470_2810304	0/0	a0006	305	3	3	0	0	0	0	copy fasta	PRSS41	chr16	2793470	2810304
PRSS41_chr16_2793470_2810304	0/0	a0007	301	3	0	2	0	1	0	copy fasta	PRSS41	chr16	2793470	2810304
PRSS41_chr16_2793470_2810304	0/0	a0008	305	1	0	0	1	0	0	copy fasta	PRSS41	chr16	2793470	2810304
PRSS41_chr16_2793470_2810304	0/0	a0009	305	1	1	0	0	0	0	copy fasta	PRSS41	chr16	2793470	2810304
PRSS41_chr16_2793470_2810304	0/0	a0010	305	1	0	0	0	0	1	copy fasta	PRSS41	chr16	2793470	2810304
PRSS41_chr16_2793470_2810304	0/0	a0011	305	1	0	0	1	0	0	copy fasta	PRSS41	chr16	2793470	2810304
PRSS41_chr16_2793470_2810304	0/0	a0012	305	1	0	1	0	0	0	copy fasta	PRSS41	chr16	2793470	2810304
PRSS48_chr4_151272161_151296862	0/0	a0000	0	235	61	39	108	5	22	copy fasta	PRSS48	chr4	151272161	151296862
PRSS48_chr4_151272161_151296862	1/0	a0001	328	103	30	12	50	2	8	copy fasta	PRSS48	chr4	151272161	151296862
PRSS48_chr4_151272161_151296862	0/1	a0002	63	90	5	21	46	5	12	copy fasta	PRSS48	chr4	151272161	151296862
PRSS50_chr3_46707117_46722869	1/1	a0001	385	264	31	58	132	11	30	copy fasta	PRSS50	chr3	46707117	46722869
PRSS50_chr3_46707117_46722869	0/0	a0002	385	125	49	16	50	1	9	copy fasta	PRSS50	chr3	46707117	46722869
PRSS50_chr3_46707117_46722869	0/0	a0003	386	13	0	5	2	3	3	copy fasta	PRSS50	chr3	46707117	46722869