JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PTGES3L_chr17_42963103_42985080	0/0	a0004	156	4	4	0	0	0	0	copy fasta	PTGES3L	chr17	42963103	42985080
PTGES3L_chr17_42963103_42985080	0/0	a0005	156	1	1	0	0	0	0	copy fasta	PTGES3L	chr17	42963103	42985080
PTGES3L_chr17_42963103_42985080	0/0	a0006	156	1	1	0	0	0	0	copy fasta	PTGES3L	chr17	42963103	42985080
PTGES3L_chr17_42963103_42985080	0/0	a0007	156	1	1	0	0	0	0	copy fasta	PTGES3L	chr17	42963103	42985080
PTGES3_chr12_56658349_56693284	1/1	a0001	160	371	90	70	159	16	34	copy fasta	PTGES3	chr12	56658349	56693284
PTGES3_chr12_56658349_56693284	0/0	a0002	160	1	0	0	1	0	0	copy fasta	PTGES3	chr12	56658349	56693284
PTGES_chr9_129733349_129758042	1/1	a0001	152	422	84	80	196	14	46	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	a0002	152	2	2	0	0	0	0	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	a0003	152	1	0	0	1	0	0	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	a0004	145	1	0	0	1	0	0	copy fasta	PTGES	chr9	129733349	129758042
PTGFRN_chr1_116904916_116995353	0/0	a0001	879	118	50	22	29	5	12	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/1	a0002	879	90	8	26	39	6	10	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	a0003	879	45	0	3	38	0	4	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	1/0	a0004	879	33	8	3	16	5	0	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	a0005	879	11	9	0	1	0	1	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	a0006	879	7	7	0	0	0	0	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	a0007	879	5	5	0	0	0	0	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	a0008	879	1	1	0	0	0	0	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	a0009	879	1	0	0	0	0	1	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	a0010	879	1	0	0	1	0	0	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	a0011	879	1	1	0	0	0	0	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	a0012	879	1	1	0	0	0	0	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFR_chr1_78485974_78545701	1/1	a0001	359	375	89	68	161	14	41	copy fasta	PTGFR	chr1	78485974	78545701
PTGFR_chr1_78485974_78545701	0/0	a0002	359	6	0	0	6	0	0	copy fasta	PTGFR	chr1	78485974	78545701
PTGFR_chr1_78485974_78545701	0/0	a0003	359	4	0	0	1	0	3	copy fasta	PTGFR	chr1	78485974	78545701
PTGFR_chr1_78485974_78545701	0/0	a0004	359	1	1	0	0	0	0	copy fasta	PTGFR	chr1	78485974	78545701
PTGIR_chr19_46615468_46630089	1/1	a0001	386	386	72	78	183	12	39	copy fasta	PTGIR	chr19	46615468	46630089
PTGIR_chr19_46615468_46630089	0/0	a0002	386	8	8	0	0	0	0	copy fasta	PTGIR	chr19	46615468	46630089
PTGIR_chr19_46615468_46630089	0/0	a0003	386	7	7	0	0	0	0	copy fasta	PTGIR	chr19	46615468	46630089
PTGIR_chr19_46615468_46630089	0/0	a0004	386	6	0	3	3	0	0	copy fasta	PTGIR	chr19	46615468	46630089
PTGIR_chr19_46615468_46630089	0/0	a0005	386	4	0	0	4	0	0	copy fasta	PTGIR	chr19	46615468	46630089
PTGIR_chr19_46615468_46630089	0/0	a0006	386	1	0	1	0	0	0	copy fasta	PTGIR	chr19	46615468	46630089
PTGIR_chr19_46615468_46630089	0/0	a0007	386	1	0	0	1	0	0	copy fasta	PTGIR	chr19	46615468	46630089
PTGIR_chr19_46615468_46630089	0/0	a0008	386	1	0	0	1	0	0	copy fasta	PTGIR	chr19	46615468	46630089
PTGIR_chr19_46615468_46630089	0/0	a0009	386	1	0	0	1	0	0	copy fasta	PTGIR	chr19	46615468	46630089
PTGIR_chr19_46615468_46630089	0/0	a0010	386	1	1	0	0	0	0	copy fasta	PTGIR	chr19	46615468	46630089
PTGIR_chr19_46615468_46630089	0/0	a0011	386	1	1	0	0	0	0	copy fasta	PTGIR	chr19	46615468	46630089
PTGIR_chr19_46615468_46630089	0/0	a0012	386	1	0	0	1	0	0	copy fasta	PTGIR	chr19	46615468	46630089
PTGIR_chr19_46615468_46630089	0/0	a0013	386	1	1	0	0	0	0	copy fasta	PTGIR	chr19	46615468	46630089
PTGIR_chr19_46615468_46630089	0/0	a0014	386	1	0	0	0	0	1	copy fasta	PTGIR	chr19	46615468	46630089
PTGIS_chr20_49498874_49573137	1/1	a0001	500	293	74	51	115	13	38	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	a0002	500	7	7	0	0	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	a0003	500	3	0	3	0	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	a0004	500	2	0	0	2	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	a0005	500	2	2	0	0	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	a0006	500	1	1	0	0	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	a0007	500	1	0	0	1	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	a0008	500	1	0	0	0	1	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	a0009	500	1	1	0	0	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	a0010	500	1	0	0	1	0	0	copy fasta	PTGIS	chr20	49498874	49573137