JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RRP7A_chr22_42503344_42524796	0/0	a0006	280	4	0	2	0	0	2	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	a0007	280	1	0	0	1	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	a0008	280	1	1	0	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	a0009	280	1	1	0	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP8_chr11_6590072_6608616	1/1	a0001	456	402	74	76	191	16	43	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	a0002	456	18	0	7	7	1	3	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	a0003	456	10	10	0	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	a0004	456	9	9	0	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	a0005	44	1	0	0	1	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	a0006	456	1	0	0	0	1	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	a0007	456	1	0	1	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	a0008	249	1	1	0	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	a0009	456	1	1	0	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	a0010	456	1	0	0	1	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	a0011	456	1	0	0	1	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	a0012	456	1	0	0	1	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	a0013	456	1	1	0	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	a0014	456	1	1	0	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	a0015	456	1	1	0	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP9_chr3_51928429_51946904	1/1	a0001	475	363	91	71	160	6	33	copy fasta	RRP9	chr3	51928429	51946904
RRP9_chr3_51928429_51946904	0/0	a0002	475	3	0	0	3	0	0	copy fasta	RRP9	chr3	51928429	51946904
RRP9_chr3_51928429_51946904	0/0	a0003	475	3	0	0	3	0	0	copy fasta	RRP9	chr3	51928429	51946904
RRP9_chr3_51928429_51946904	0/0	a0004	475	2	0	2	0	0	0	copy fasta	RRP9	chr3	51928429	51946904
RRP9_chr3_51928429_51946904	0/0	a0005	475	1	1	0	0	0	0	copy fasta	RRP9	chr3	51928429	51946904
RRP9_chr3_51928429_51946904	0/0	a0006	475	1	0	0	1	0	0	copy fasta	RRP9	chr3	51928429	51946904
RRP9_chr3_51928429_51946904	0/0	a0007	475	1	0	0	0	0	1	copy fasta	RRP9	chr3	51928429	51946904
RRP9_chr3_51928429_51946904	0/0	a0008	475	1	0	1	0	0	0	copy fasta	RRP9	chr3	51928429	51946904
RRP9_chr3_51928429_51946904	0/0	a0009	475	1	0	0	1	0	0	copy fasta	RRP9	chr3	51928429	51946904
RRS1_chr8_66424014_66435733	1/1	a0001	365	345	83	66	140	16	38	copy fasta	RRS1	chr8	66424014	66435733
RRS1_chr8_66424014_66435733	0/0	a0002	365	41	0	7	33	0	1	copy fasta	RRS1	chr8	66424014	66435733
RRS1_chr8_66424014_66435733	0/0	a0003	365	18	6	1	10	0	1	copy fasta	RRS1	chr8	66424014	66435733
RRS1_chr8_66424014_66435733	0/0	a0004	365	17	6	2	9	0	0	copy fasta	RRS1	chr8	66424014	66435733
RRS1_chr8_66424014_66435733	0/0	a0005	365	3	3	0	0	0	0	copy fasta	RRS1	chr8	66424014	66435733
RRS1_chr8_66424014_66435733	0/0	a0006	365	1	0	0	0	0	1	copy fasta	RRS1	chr8	66424014	66435733
RRS1_chr8_66424014_66435733	0/0	a0007	365	1	0	0	0	0	1	copy fasta	RRS1	chr8	66424014	66435733
RS1_chrX_18634688_18677108	1/1	a0001	224	301	70	56	130	11	32	copy fasta	RS1	chrX	18634688	18677108
RS1_chrX_18634688_18677108	0/0	a0002	224	5	5	0	0	0	0	copy fasta	RS1	chrX	18634688	18677108
RS1_chrX_18634688_18677108	0/0	a0003	224	1	0	0	1	0	0	copy fasta	RS1	chrX	18634688	18677108
RS1_chrX_18634688_18677108	0/0	a0004	224	1	1	0	0	0	0	copy fasta	RS1	chrX	18634688	18677108
RSAD1_chr17_50473860_50490974	0/1	a0001	442	180	58	42	50	7	22	copy fasta	RSAD1	chr17	50473860	50490974
RSAD1_chr17_50473860_50490974	1/0	a0002	442	170	9	31	99	10	20	copy fasta	RSAD1	chr17	50473860	50490974
RSAD1_chr17_50473860_50490974	0/0	a0003	442	21	19	2	0	0	0	copy fasta	RSAD1	chr17	50473860	50490974
RSAD1_chr17_50473860_50490974	0/0	a0004	442	1	0	0	0	1	0	copy fasta	RSAD1	chr17	50473860	50490974
RSAD1_chr17_50473860_50490974	0/0	a0005	442	1	1	0	0	0	0	copy fasta	RSAD1	chr17	50473860	50490974
RSAD1_chr17_50473860_50490974	0/0	a0006	442	1	0	0	0	0	1	copy fasta	RSAD1	chr17	50473860	50490974
RSAD1_chr17_50473860_50490974	0/0	a0007	442	1	0	1	0	0	0	copy fasta	RSAD1	chr17	50473860	50490974
RSAD1_chr17_50473860_50490974	0/0	a0008	442	1	0	0	1	0	0	copy fasta	RSAD1	chr17	50473860	50490974
RSAD1_chr17_50473860_50490974	0/0	a0009	370	1	0	0	0	0	1	copy fasta	RSAD1	chr17	50473860	50490974
RSAD1_chr17_50473860_50490974	0/0	a0010	442	1	0	0	1	0	0	copy fasta	RSAD1	chr17	50473860	50490974
RSAD1_chr17_50473860_50490974	0/0	a0011	442	1	1	0	0	0	0	copy fasta	RSAD1	chr17	50473860	50490974