JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RYK_chr3_134152133_134255859	0/0	a0013	607	1	1	0	0	0	0	copy fasta	RYK	chr3	134152133	134255859
RYR1_chr19_38428691_38592564	1/1	a0001	5038	146	35	39	53	1	16	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	a0002	5038	12	0	2	1	1	8	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	a0003	5038	11	0	4	6	0	1	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	a0004	5038	7	6	1	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	a0005	5038	4	0	1	0	0	3	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	a0006	5038	4	4	0	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	a0007	5038	3	3	0	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	a0008	5038	3	3	0	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	a0009	5038	2	0	1	1	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	a0010	5037	2	0	0	0	0	2	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	a0011	5038	1	0	0	1	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	a0012	816	1	0	0	1	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	a0013	5038	1	0	0	0	0	1	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	a0014	5038	1	1	0	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	a0015	5038	1	1	0	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	a0016	5038	1	1	0	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	a0017	5038	1	1	0	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	a0018	5038	1	1	0	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	a0019	5038	1	1	0	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	a0020	5038	1	1	0	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	a0021	5038	1	0	0	1	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	a0022	5038	1	0	0	0	0	1	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	a0023	5038	1	1	0	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	a0024	5038	1	0	0	1	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	a0025	5038	1	0	0	1	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	a0026	5038	1	0	0	0	0	1	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	a0027	5038	1	0	0	1	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	a0028	5038	1	1	0	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	a0029	5038	1	1	0	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	a0030	5038	1	0	1	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	a0031	5038	1	0	0	1	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	a0032	5038	1	0	0	0	0	1	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	a0033	5038	1	1	0	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR1_chr19_38428691_38592564	0/0	a0034	5038	1	0	1	0	0	0	copy fasta	RYR1	chr19	38428691	38592564
RYR2_chr1_237037184_237838988	0/0	a0001	4967	77	34	22	10	2	9	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	a0002	4967	11	4	4	3	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	a0003	4967	8	0	8	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	a0004	4967	1	1	0	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	a0005	4967	1	0	0	1	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	a0006	4967	1	0	0	0	0	1	copy fasta	RYR2	chr1	237037184	237838988
RYR2_chr1_237037184_237838988	0/0	a0007	4967	1	1	0	0	0	0	copy fasta	RYR2	chr1	237037184	237838988
RYR3_chr15_33305967_33871102	0/1	a0001	4870	46	13	8	20	1	3	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	a0002	4870	13	9	2	2	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	a0003	4870	10	10	0	0	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	a0004	4870	9	1	0	7	1	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	a0005	4870	8	6	0	0	1	1	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	a0006	4870	5	2	2	0	0	1	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	a0007	4870	4	3	1	0	0	0	copy fasta	RYR3	chr15	33305967	33871102
RYR3_chr15_33305967_33871102	0/0	a0008	4870	4	0	0	4	0	0	copy fasta	RYR3	chr15	33305967	33871102