JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
S100G_chrX_16645158_16659670	1/1	a0001	79	348	80	64	159	11	32	copy fasta	S100G	chrX	16645158	16659670
S100PBP_chr1_32812653_32863875	1/1	a0001	408	330	80	65	125	16	42	copy fasta	S100PBP	chr1	32812653	32863875
S100PBP_chr1_32812653_32863875	0/0	a0002	408	4	3	1	0	0	0	copy fasta	S100PBP	chr1	32812653	32863875
S100PBP_chr1_32812653_32863875	0/0	a0003	408	3	3	0	0	0	0	copy fasta	S100PBP	chr1	32812653	32863875
S100PBP_chr1_32812653_32863875	0/0	a0004	408	2	0	0	2	0	0	copy fasta	S100PBP	chr1	32812653	32863875
S100PBP_chr1_32812653_32863875	0/0	a0005	408	1	0	0	1	0	0	copy fasta	S100PBP	chr1	32812653	32863875
S100P_chr4_6688878_6702170	1/1	a0001	95	481	100	86	226	18	49	copy fasta	S100P	chr4	6688878	6702170
S100P_chr4_6688878_6702170	0/0	a0002	95	1	0	0	0	0	1	copy fasta	S100P	chr4	6688878	6702170
S100Z_chr5_76845014_76926650	0/0	a0001	99	174	48	40	61	8	17	copy fasta	S100Z	chr5	76845014	76926650
S100Z_chr5_76845014_76926650	1/1	a0002	99	174	44	24	75	4	25	copy fasta	S100Z	chr5	76845014	76926650
S1PR1_chr1_101232019_101246518	1/1	a0001	382	441	82	69	220	18	50	copy fasta	S1PR1	chr1	101232019	101246518
S1PR1_chr1_101232019_101246518	0/0	a0002	382	12	12	0	0	0	0	copy fasta	S1PR1	chr1	101232019	101246518
S1PR1_chr1_101232019_101246518	0/0	a0003	382	2	0	2	0	0	0	copy fasta	S1PR1	chr1	101232019	101246518
S1PR1_chr1_101232019_101246518	0/0	a0004	382	1	0	1	0	0	0	copy fasta	S1PR1	chr1	101232019	101246518
S1PR2_chr19_10216433_10236331	1/1	a0001	353	396	86	74	185	14	35	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	a0002	353	2	0	2	0	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	a0003	353	1	0	0	1	0	0	copy fasta	S1PR2	chr19	10216433	10236331
S1PR2_chr19_10216433_10236331	0/0	a0004	353	1	0	0	0	0	1	copy fasta	S1PR2	chr19	10216433	10236331
S1PR3_chr9_88986468_89010155	1/1	a0001	378	385	94	77	151	15	46	copy fasta	S1PR3	chr9	88986468	89010155
S1PR3_chr9_88986468_89010155	0/0	a0002	378	10	3	5	0	0	2	copy fasta	S1PR3	chr9	88986468	89010155
S1PR3_chr9_88986468_89010155	0/0	a0003	378	4	0	0	4	0	0	copy fasta	S1PR3	chr9	88986468	89010155
S1PR3_chr9_88986468_89010155	0/0	a0004	378	1	1	0	0	0	0	copy fasta	S1PR3	chr9	88986468	89010155
S1PR3_chr9_88986468_89010155	0/0	a0005	378	1	0	0	1	0	0	copy fasta	S1PR3	chr9	88986468	89010155
S1PR3_chr9_88986468_89010155	0/0	a0006	378	1	0	0	0	1	0	copy fasta	S1PR3	chr9	88986468	89010155
S1PR4_chr19_3173769_3185332	1/1	a0001	384	402	96	73	170	15	46	copy fasta	S1PR4	chr19	3173769	3185332
S1PR4_chr19_3173769_3185332	0/0	a0002	384	5	0	0	5	0	0	copy fasta	S1PR4	chr19	3173769	3185332
S1PR4_chr19_3173769_3185332	0/0	a0003	384	4	0	0	4	0	0	copy fasta	S1PR4	chr19	3173769	3185332
S1PR4_chr19_3173769_3185332	0/0	a0004	384	2	0	2	0	0	0	copy fasta	S1PR4	chr19	3173769	3185332
S1PR4_chr19_3173769_3185332	0/0	a0005	384	1	0	0	1	0	0	copy fasta	S1PR4	chr19	3173769	3185332
S1PR4_chr19_3173769_3185332	0/0	a0006	384	1	0	1	0	0	0	copy fasta	S1PR4	chr19	3173769	3185332
S1PR4_chr19_3173769_3185332	0/0	a0007	384	1	0	0	0	1	0	copy fasta	S1PR4	chr19	3173769	3185332
S1PR4_chr19_3173769_3185332	0/0	a0008	384	1	0	0	1	0	0	copy fasta	S1PR4	chr19	3173769	3185332
S1PR4_chr19_3173769_3185332	0/0	a0009	384	1	0	0	1	0	0	copy fasta	S1PR4	chr19	3173769	3185332
S1PR5_chr19_10507742_10522447	1/1	a0001	398	430	92	75	201	18	42	copy fasta	S1PR5	chr19	10507742	10522447
S1PR5_chr19_10507742_10522447	0/0	a0002	398	6	0	1	1	0	4	copy fasta	S1PR5	chr19	10507742	10522447
S1PR5_chr19_10507742_10522447	0/0	a0003	398	5	0	0	5	0	0	copy fasta	S1PR5	chr19	10507742	10522447
S1PR5_chr19_10507742_10522447	0/0	a0004	392	3	3	0	0	0	0	copy fasta	S1PR5	chr19	10507742	10522447
S1PR5_chr19_10507742_10522447	0/0	a0005	398	1	1	0	0	0	0	copy fasta	S1PR5	chr19	10507742	10522447
S1PR5_chr19_10507742_10522447	0/0	a0006	398	1	0	0	1	0	0	copy fasta	S1PR5	chr19	10507742	10522447
SAA1_chr11_18261264_18274967	0/0	a0001	122	170	32	46	61	15	16	copy fasta	SAA1	chr11	18261264	18274967
SAA1_chr11_18261264_18274967	0/1	a0002	122	146	43	26	58	2	16	copy fasta	SAA1	chr11	18261264	18274967
SAA1_chr11_18261264_18274967	0/0	a0003	122	84	3	5	69	1	6	copy fasta	SAA1	chr11	18261264	18274967
SAA1_chr11_18261264_18274967	0/0	a0004	122	12	11	1	0	0	0	copy fasta	SAA1	chr11	18261264	18274967
SAA1_chr11_18261264_18274967	0/0	a0005	122	9	0	0	9	0	0	copy fasta	SAA1	chr11	18261264	18274967
SAA1_chr11_18261264_18274967	0/0	a0006	118	6	6	0	0	0	0	copy fasta	SAA1	chr11	18261264	18274967
SAA1_chr11_18261264_18274967	1/0	a0007	122	4	3	0	0	0	0	copy fasta	SAA1	chr11	18261264	18274967
SAA1_chr11_18261264_18274967	0/0	a0008	122	3	0	3	0	0	0	copy fasta	SAA1	chr11	18261264	18274967
SAA1_chr11_18261264_18274967	0/0	a0009	122	3	1	1	1	0	0	copy fasta	SAA1	chr11	18261264	18274967
SAA1_chr11_18261264_18274967	0/0	a0010	122	2	0	0	2	0	0	copy fasta	SAA1	chr11	18261264	18274967
SAA1_chr11_18261264_18274967	0/0	a0011	122	2	0	0	2	0	0	copy fasta	SAA1	chr11	18261264	18274967