JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SALL2_chr14_21516080_21531346	0/0	a0006	1005	9	9	0	0	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	a0007	1005	8	0	0	8	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	a0008	1005	6	6	0	0	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	a0009	1005	6	6	0	0	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	a0010	1006	5	0	0	5	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	a0011	1005	4	3	1	0	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	a0012	1005	2	2	0	0	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	a0013	1005	2	2	0	0	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	a0014	1005	2	0	0	2	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	a0015	1005	2	2	0	0	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	a0016	1005	2	0	2	0	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	a0017	1005	1	1	0	0	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	a0018	1005	1	1	0	0	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	a0019	1005	1	1	0	0	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	a0020	1005	1	1	0	0	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	a0021	1005	1	1	0	0	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	a0022	1005	1	0	0	0	0	1	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	a0023	1005	1	0	0	1	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	a0024	1005	1	1	0	0	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	a0025	1005	1	0	0	1	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	a0026	1006	1	0	0	1	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	a0027	1005	1	0	0	1	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	a0028	1005	1	0	0	1	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	a0029	1005	1	1	0	0	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	a0030	1005	1	0	0	1	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	a0031	1005	1	1	0	0	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	a0032	1005	1	0	0	1	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	a0033	1005	1	0	0	1	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	a0034	1005	1	1	0	0	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL2_chr14_21516080_21531346	0/0	a0035	1005	1	1	0	0	0	0	copy fasta	SALL2	chr14	21516080	21531346
SALL3_chr18_78974818_79003969	0/0	a0001	1300	190	31	45	80	11	23	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/1	a0002	1300	55	20	5	18	2	9	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	a0003	1300	25	23	2	0	0	0	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	a0004	1300	18	16	1	0	0	1	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	a0005	1300	8	0	1	5	2	0	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	a0006	1300	7	2	1	0	1	3	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	a0007	1300	4	0	0	4	0	0	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	a0008	1300	2	2	0	0	0	0	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	a0009	1300	1	0	0	1	0	0	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	a0010	1305	1	1	0	0	0	0	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	a0011	1300	1	0	0	1	0	0	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	a0012	1300	1	1	0	0	0	0	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	a0013	1300	1	0	0	1	0	0	copy fasta	SALL3	chr18	78974818	79003969
SALL3_chr18_78974818_79003969	0/0	a0014	1300	1	0	1	0	0	0	copy fasta	SALL3	chr18	78974818	79003969
SALL4_chr20_51777331_51807521	1/0	a0001	1053	211	61	38	82	9	20	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/1	a0002	1053	126	11	29	60	6	19	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	a0003	1053	15	9	5	0	1	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	a0004	1053	12	11	1	0	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	a0005	1053	6	0	0	6	0	0	copy fasta	SALL4	chr20	51777331	51807521
SALL4_chr20_51777331_51807521	0/0	a0006	1053	4	0	0	4	0	0	copy fasta	SALL4	chr20	51777331	51807521