JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SAMD15_chr14_77372379_77397163	0/0	a0005	674	4	4	0	0	0	0	copy fasta	SAMD15	chr14	77372379	77397163
SAMD15_chr14_77372379_77397163	0/0	a0006	69	3	3	0	0	0	0	copy fasta	SAMD15	chr14	77372379	77397163
SAMD15_chr14_77372379_77397163	0/0	a0007	674	1	0	0	1	0	0	copy fasta	SAMD15	chr14	77372379	77397163
SAMD15_chr14_77372379_77397163	0/0	a0008	674	1	0	0	0	0	1	copy fasta	SAMD15	chr14	77372379	77397163
SAMD15_chr14_77372379_77397163	0/0	a0009	674	1	0	0	1	0	0	copy fasta	SAMD15	chr14	77372379	77397163
SAMD15_chr14_77372379_77397163	0/0	a0010	674	1	0	0	1	0	0	copy fasta	SAMD15	chr14	77372379	77397163
SAMD15_chr14_77372379_77397163	0/0	a0011	674	1	0	0	1	0	0	copy fasta	SAMD15	chr14	77372379	77397163
SAMD15_chr14_77372379_77397163	0/0	a0012	674	1	0	0	0	0	1	copy fasta	SAMD15	chr14	77372379	77397163
SAMD15_chr14_77372379_77397163	0/0	a0013	674	1	0	0	1	0	0	copy fasta	SAMD15	chr14	77372379	77397163
SAMD15_chr14_77372379_77397163	0/0	a0014	674	1	1	0	0	0	0	copy fasta	SAMD15	chr14	77372379	77397163
SAMD3_chr6_130139315_130227951	1/1	a0001	520	328	76	57	138	10	45	copy fasta	SAMD3	chr6	130139315	130227951
SAMD3_chr6_130139315_130227951	0/0	a0002	520	3	0	0	3	0	0	copy fasta	SAMD3	chr6	130139315	130227951
SAMD3_chr6_130139315_130227951	0/0	a0003	520	1	1	0	0	0	0	copy fasta	SAMD3	chr6	130139315	130227951
SAMD3_chr6_130139315_130227951	0/0	a0004	520	1	0	0	0	0	1	copy fasta	SAMD3	chr6	130139315	130227951
SAMD3_chr6_130139315_130227951	0/0	a0005	520	1	0	1	0	0	0	copy fasta	SAMD3	chr6	130139315	130227951
SAMD3_chr6_130139315_130227951	0/0	a0006	520	1	1	0	0	0	0	copy fasta	SAMD3	chr6	130139315	130227951
SAMD3_chr6_130139315_130227951	0/0	a0007	520	1	1	0	0	0	0	copy fasta	SAMD3	chr6	130139315	130227951
SAMD3_chr6_130139315_130227951	0/0	a0008	520	1	0	0	1	0	0	copy fasta	SAMD3	chr6	130139315	130227951
SAMD3_chr6_130139315_130227951	0/0	a0009	520	1	1	0	0	0	0	copy fasta	SAMD3	chr6	130139315	130227951
SAMD4A_chr14_54562128_54798312	1/0	a0001	718	252	84	44	93	5	25	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/1	a0002	719	6	0	2	3	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	a0003	718	1	0	0	0	1	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	a0004	718	1	1	0	0	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	a0005	718	1	1	0	0	0	0	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4A_chr14_54562128_54798312	0/0	a0006	718	1	0	0	0	0	1	copy fasta	SAMD4A	chr14	54562128	54798312
SAMD4B_chr19_39337421_39390700	1/1	a0001	694	230	78	38	82	12	18	copy fasta	SAMD4B	chr19	39337421	39390700
SAMD4B_chr19_39337421_39390700	0/0	a0002	694	2	0	0	0	0	2	copy fasta	SAMD4B	chr19	39337421	39390700
SAMD5_chr6_147503690_147575021	1/1	a0001	173	331	73	71	129	15	41	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	a0002	173	20	0	3	15	1	1	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	a0003	173	8	8	0	0	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	a0004	173	4	4	0	0	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD5_chr6_147503690_147575021	0/0	a0005	173	1	1	0	0	0	0	copy fasta	SAMD5	chr6	147503690	147575021
SAMD7_chr3_169906572_169944175	1/1	a0001	446	341	83	64	140	14	38	copy fasta	SAMD7	chr3	169906572	169944175
SAMD7_chr3_169906572_169944175	0/0	a0002	446	64	9	14	33	2	6	copy fasta	SAMD7	chr3	169906572	169944175
SAMD7_chr3_169906572_169944175	0/0	a0003	446	2	2	0	0	0	0	copy fasta	SAMD7	chr3	169906572	169944175
SAMD7_chr3_169906572_169944175	0/0	a0004	446	2	2	0	0	0	0	copy fasta	SAMD7	chr3	169906572	169944175
SAMD7_chr3_169906572_169944175	0/0	a0005	446	1	1	0	0	0	0	copy fasta	SAMD7	chr3	169906572	169944175
SAMD7_chr3_169906572_169944175	0/0	a0006	446	1	1	0	0	0	0	copy fasta	SAMD7	chr3	169906572	169944175
SAMD7_chr3_169906572_169944175	0/0	a0007	446	1	1	0	0	0	0	copy fasta	SAMD7	chr3	169906572	169944175
SAMD7_chr3_169906572_169944175	0/0	a0008	446	1	0	0	1	0	0	copy fasta	SAMD7	chr3	169906572	169944175
SAMD7_chr3_169906572_169944175	0/0	a0009	446	1	1	0	0	0	0	copy fasta	SAMD7	chr3	169906572	169944175
SAMD7_chr3_169906572_169944175	0/0	a0010	446	1	0	0	1	0	0	copy fasta	SAMD7	chr3	169906572	169944175
SAMD7_chr3_169906572_169944175	0/0	a0011	446	1	0	0	1	0	0	copy fasta	SAMD7	chr3	169906572	169944175
SAMD8_chr10_75106656_75187123	1/1	a0001	415	322	90	54	134	14	28	copy fasta	SAMD8	chr10	75106656	75187123
SAMD8_chr10_75106656_75187123	0/0	a0002	415	1	0	0	1	0	0	copy fasta	SAMD8	chr10	75106656	75187123
SAMD8_chr10_75106656_75187123	0/0	a0003	415	1	0	0	1	0	0	copy fasta	SAMD8	chr10	75106656	75187123
SAMD9L_chr7_93125056_93153385	1/1	a0001	1584	238	47	42	112	9	26	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	a0002	1584	63	18	8	36	0	1	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	a0003	1584	29	3	9	9	1	7	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	a0004	1584	27	0	1	25	0	1	copy fasta	SAMD9L	chr7	93125056	93153385