JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SAMD9L_chr7_93125056_93153385	0/0	a0005	1584	13	12	1	0	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	a0006	1584	9	7	1	0	0	1	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	a0007	1584	4	3	1	0	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	a0008	1584	3	3	0	0	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	a0009	1584	3	0	0	2	0	1	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	a0010	1584	3	0	0	0	0	3	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	a0011	1584	2	0	0	2	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	a0012	1584	2	0	2	0	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	a0013	1584	1	0	0	0	0	1	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	a0014	1584	1	0	0	0	0	1	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	a0015	1584	1	1	0	0	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	a0016	1584	1	0	0	1	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	a0017	1584	1	0	1	0	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9L_chr7_93125056_93153385	0/0	a0018	1584	1	0	0	1	0	0	copy fasta	SAMD9L	chr7	93125056	93153385
SAMD9_chr7_93094518_93122979	1/1	a0001	1589	262	48	38	139	6	29	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	a0002	1589	52	6	7	38	0	1	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	a0003	1589	18	13	5	0	0	0	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	a0004	1589	16	0	1	9	1	5	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	a0005	1589	12	11	0	1	0	0	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	a0006	1589	8	7	1	0	0	0	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	a0007	1589	3	3	0	0	0	0	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	a0008	1589	2	0	2	0	0	0	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	a0009	1589	2	0	0	2	0	0	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	a0010	1589	2	0	2	0	0	0	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	a0011	1589	2	0	2	0	0	0	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	a0012	1589	2	2	0	0	0	0	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	a0013	1589	1	0	1	0	0	0	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	a0014	1589	1	0	0	1	0	0	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	a0015	1589	1	1	0	0	0	0	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	a0016	1589	1	0	0	0	0	1	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	a0017	1589	1	0	0	1	0	0	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	a0018	1589	1	1	0	0	0	0	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	a0019	1589	1	1	0	0	0	0	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	a0020	1589	1	1	0	0	0	0	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	a0021	1589	1	0	0	0	1	0	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	a0022	1589	1	0	1	0	0	0	copy fasta	SAMD9	chr7	93094518	93122979
SAMD9_chr7_93094518_93122979	0/0	a0023	1589	1	0	0	1	0	0	copy fasta	SAMD9	chr7	93094518	93122979
SAMHD1_chr20_36885229_36956708	1/1	a0001	626	339	87	62	134	16	38	copy fasta	SAMHD1	chr20	36885229	36956708
SAMHD1_chr20_36885229_36956708	0/0	a0002	626	1	1	0	0	0	0	copy fasta	SAMHD1	chr20	36885229	36956708
SAMM50_chr22_43950442_44001529	0/0	a0001	469	198	75	25	73	5	20	copy fasta	SAMM50	chr22	43950442	44001529
SAMM50_chr22_43950442_44001529	0/1	a0002	469	100	10	24	54	6	5	copy fasta	SAMM50	chr22	43950442	44001529
SAMM50_chr22_43950442_44001529	1/0	a0003	469	78	9	21	28	5	14	copy fasta	SAMM50	chr22	43950442	44001529
SAMM50_chr22_43950442_44001529	0/0	a0004	469	1	0	0	1	0	0	copy fasta	SAMM50	chr22	43950442	44001529
SAMM50_chr22_43950442_44001529	0/0	a0005	469	1	0	0	0	0	1	copy fasta	SAMM50	chr22	43950442	44001529
SAMSN1_chr21_14480228_14551315	1/1	a0001	373	392	81	67	184	18	40	copy fasta	SAMSN1	chr21	14480228	14551315
SAMSN1_chr21_14480228_14551315	0/0	a0002	373	14	11	3	0	0	0	copy fasta	SAMSN1	chr21	14480228	14551315
SAMSN1_chr21_14480228_14551315	0/0	a0003	373	1	1	0	0	0	0	copy fasta	SAMSN1	chr21	14480228	14551315
SAMSN1_chr21_14480228_14551315	0/0	a0004	373	1	1	0	0	0	0	copy fasta	SAMSN1	chr21	14480228	14551315
SANBR_chr2_61060871_61129280	1/1	a0001	718	336	91	77	122	16	28	copy fasta	SANBR	chr2	61060871	61129280
SANBR_chr2_61060871_61129280	0/0	a0002	718	3	0	0	3	0	0	copy fasta	SANBR	chr2	61060871	61129280