JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SANBR_chr2_61060871_61129280	0/0	a0003	718	1	0	0	1	0	0	copy fasta	SANBR	chr2	61060871	61129280
SANBR_chr2_61060871_61129280	0/0	a0004	718	1	0	0	1	0	0	copy fasta	SANBR	chr2	61060871	61129280
SANBR_chr2_61060871_61129280	0/0	a0005	718	1	1	0	0	0	0	copy fasta	SANBR	chr2	61060871	61129280
SANBR_chr2_61060871_61129280	0/0	a0006	718	1	0	0	1	0	0	copy fasta	SANBR	chr2	61060871	61129280
SANBR_chr2_61060871_61129280	0/0	a0007	718	1	0	1	0	0	0	copy fasta	SANBR	chr2	61060871	61129280
SANBR_chr2_61060871_61129280	0/0	a0008	718	1	0	0	1	0	0	copy fasta	SANBR	chr2	61060871	61129280
SANBR_chr2_61060871_61129280	0/0	a0009	718	1	0	0	1	0	0	copy fasta	SANBR	chr2	61060871	61129280
SAP130_chr2_127936222_128033059	1/1	a0001	1057	349	92	60	149	8	38	copy fasta	SAP130	chr2	127936222	128033059
SAP130_chr2_127936222_128033059	0/0	a0002	1057	1	0	0	1	0	0	copy fasta	SAP130	chr2	127936222	128033059
SAP18_chr13_21135119_21154097	1/1	a0001	172	425	88	80	189	18	48	copy fasta	SAP18	chr13	21135119	21154097
SAP18_chr13_21135119_21154097	0/0	a0002	172	1	0	0	1	0	0	copy fasta	SAP18	chr13	21135119	21154097
SAP25_chr7_100567228_100578900	1/1	a0001	297	374	87	61	158	18	48	copy fasta	SAP25	chr7	100567228	100578900
SAP25_chr7_100567228_100578900	0/0	a0002	297	5	4	1	0	0	0	copy fasta	SAP25	chr7	100567228	100578900
SAP25_chr7_100567228_100578900	0/0	a0003	297	2	0	0	0	0	2	copy fasta	SAP25	chr7	100567228	100578900
SAP25_chr7_100567228_100578900	0/0	a0004	297	1	0	0	1	0	0	copy fasta	SAP25	chr7	100567228	100578900
SAP25_chr7_100567228_100578900	0/0	a0005	297	1	0	0	1	0	0	copy fasta	SAP25	chr7	100567228	100578900
SAP25_chr7_100567228_100578900	0/0	a0006	297	1	1	0	0	0	0	copy fasta	SAP25	chr7	100567228	100578900
SAP25_chr7_100567228_100578900	0/0	a0007	297	1	0	0	1	0	0	copy fasta	SAP25	chr7	100567228	100578900
SAP25_chr7_100567228_100578900	0/0	a0008	297	1	0	0	1	0	0	copy fasta	SAP25	chr7	100567228	100578900
SAP30BP_chr17_75662338_75713059	1/1	a0001	308	368	88	60	160	12	46	copy fasta	SAP30BP	chr17	75662338	75713059
SAP30BP_chr17_75662338_75713059	0/0	a0002	308	1	1	0	0	0	0	copy fasta	SAP30BP	chr17	75662338	75713059
SAP30BP_chr17_75662338_75713059	0/0	a0003	308	1	1	0	0	0	0	copy fasta	SAP30BP	chr17	75662338	75713059
SAP30L_chr5_154440997_154466053	1/1	a0001	183	458	94	80	214	18	50	copy fasta	SAP30L	chr5	154440997	154466053
SAP30L_chr5_154440997_154466053	0/0	a0002	183	2	2	0	0	0	0	copy fasta	SAP30L	chr5	154440997	154466053
SAP30_chr4_173365954_173382532	1/1	a0001	220	337	91	52	144	8	40	copy fasta	SAP30	chr4	173365954	173382532
SAP30_chr4_173365954_173382532	0/0	a0002	220	22	2	2	18	0	0	copy fasta	SAP30	chr4	173365954	173382532
SAP30_chr4_173365954_173382532	0/0	a0003	220	2	0	0	0	2	0	copy fasta	SAP30	chr4	173365954	173382532
SAP30_chr4_173365954_173382532	0/0	a0004	220	1	1	0	0	0	0	copy fasta	SAP30	chr4	173365954	173382532
SAPCD1_chr6_31757656_31769850	0/1	a0001	178	337	80	54	142	18	42	copy fasta	SAPCD1	chr6	31757656	31769850
SAPCD1_chr6_31757656_31769850	0/0	a0002	178	72	9	19	40	0	4	copy fasta	SAPCD1	chr6	31757656	31769850
SAPCD1_chr6_31757656_31769850	0/0	a0003	178	4	0	4	0	0	0	copy fasta	SAPCD1	chr6	31757656	31769850
SAPCD1_chr6_31757656_31769850	0/0	a0004	178	3	3	0	0	0	0	copy fasta	SAPCD1	chr6	31757656	31769850
SAPCD1_chr6_31757656_31769850	0/0	a0005	178	1	0	1	0	0	0	copy fasta	SAPCD1	chr6	31757656	31769850
SAPCD2_chr9_137057127_137075557	1/1	a0001	394	218	46	52	75	12	31	copy fasta	SAPCD2	chr9	137057127	137075557
SAPCD2_chr9_137057127_137075557	0/0	a0002	394	187	45	23	97	6	16	copy fasta	SAPCD2	chr9	137057127	137075557
SAPCD2_chr9_137057127_137075557	0/0	a0003	394	5	5	0	0	0	0	copy fasta	SAPCD2	chr9	137057127	137075557
SAPCD2_chr9_137057127_137075557	0/0	a0004	394	2	0	0	2	0	0	copy fasta	SAPCD2	chr9	137057127	137075557
SAPCD2_chr9_137057127_137075557	0/0	a0005	394	1	0	0	0	0	1	copy fasta	SAPCD2	chr9	137057127	137075557
SAPCD2_chr9_137057127_137075557	0/0	a0006	394	1	0	1	0	0	0	copy fasta	SAPCD2	chr9	137057127	137075557
SAR1A_chr10_70142289_70175514	1/1	a0001	198	420	96	76	184	18	44	copy fasta	SAR1A	chr10	70142289	70175514
SAR1B_chr5_134596149_134637828	1/1	a0001	198	320	92	58	132	8	28	copy fasta	SAR1B	chr5	134596149	134637828
SAR1B_chr5_134596149_134637828	0/0	a0002	105	1	0	0	1	0	0	copy fasta	SAR1B	chr5	134596149	134637828
SAR1B_chr5_134596149_134637828	0/0	a0003	198	1	0	0	1	0	0	copy fasta	SAR1B	chr5	134596149	134637828
SARAF_chr8_30058003_30088064	1/1	a0001	339	351	85	55	158	14	37	copy fasta	SARAF	chr8	30058003	30088064
SARAF_chr8_30058003_30088064	0/0	a0002	339	7	6	1	0	0	0	copy fasta	SARAF	chr8	30058003	30088064
SARAF_chr8_30058003_30088064	0/0	a0003	339	1	1	0	0	0	0	copy fasta	SARAF	chr8	30058003	30088064
SARAF_chr8_30058003_30088064	0/0	a0004	339	1	0	0	0	0	1	copy fasta	SARAF	chr8	30058003	30088064
SARDH_chr9_133658560_133743352	0/1	a0001	918	98	18	20	43	8	8	copy fasta	SARDH	chr9	133658560	133743352
SARDH_chr9_133658560_133743352	1/0	a0002	918	89	9	22	33	6	18	copy fasta	SARDH	chr9	133658560	133743352
SARDH_chr9_133658560_133743352	0/0	a0003	918	56	41	5	4	0	6	copy fasta	SARDH	chr9	133658560	133743352