JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SARDH_chr9_133658560_133743352	0/0	a0004	918	4	2	2	0	0	0	copy fasta	SARDH	chr9	133658560	133743352
SARDH_chr9_133658560_133743352	0/0	a0005	918	3	3	0	0	0	0	copy fasta	SARDH	chr9	133658560	133743352
SARDH_chr9_133658560_133743352	0/0	a0006	918	2	2	0	0	0	0	copy fasta	SARDH	chr9	133658560	133743352
SARDH_chr9_133658560_133743352	0/0	a0007	918	2	1	1	0	0	0	copy fasta	SARDH	chr9	133658560	133743352
SARDH_chr9_133658560_133743352	0/0	a0008	918	1	0	1	0	0	0	copy fasta	SARDH	chr9	133658560	133743352
SARDH_chr9_133658560_133743352	0/0	a0009	918	1	1	0	0	0	0	copy fasta	SARDH	chr9	133658560	133743352
SARDH_chr9_133658560_133743352	0/0	a0010	918	1	0	0	0	1	0	copy fasta	SARDH	chr9	133658560	133743352
SARDH_chr9_133658560_133743352	0/0	a0011	918	1	0	0	0	1	0	copy fasta	SARDH	chr9	133658560	133743352
SARDH_chr9_133658560_133743352	0/0	a0012	918	1	0	0	0	0	1	copy fasta	SARDH	chr9	133658560	133743352
SARDH_chr9_133658560_133743352	0/0	a0013	918	1	0	0	0	0	1	copy fasta	SARDH	chr9	133658560	133743352
SARDH_chr9_133658560_133743352	0/0	a0014	918	1	0	1	0	0	0	copy fasta	SARDH	chr9	133658560	133743352
SARDH_chr9_133658560_133743352	0/0	a0015	918	1	1	0	0	0	0	copy fasta	SARDH	chr9	133658560	133743352
SARM1_chr17_28366694_28409049	1/1	a0001	724	326	92	62	120	10	40	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	0/0	a0002	724	5	0	0	5	0	0	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	0/0	a0003	724	2	0	2	0	0	0	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	0/0	a0004	724	1	1	0	0	0	0	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	0/0	a0005	724	1	1	0	0	0	0	copy fasta	SARM1	chr17	28366694	28409049
SARM1_chr17_28366694_28409049	0/0	a0006	724	1	0	0	1	0	0	copy fasta	SARM1	chr17	28366694	28409049
SARNP_chr12_55752270_55822724	1/1	a0001	210	274	92	52	94	6	28	copy fasta	SARNP	chr12	55752270	55822724
SARNP_chr12_55752270_55822724	0/0	a0002	210	2	0	0	2	0	0	copy fasta	SARNP	chr12	55752270	55822724
SARS1_chr1_109208918_109243182	1/1	a0001	514	401	96	72	167	18	46	copy fasta	SARS1	chr1	109208918	109243182
SARS1_chr1_109208918_109243182	0/0	a0002	514	1	0	0	1	0	0	copy fasta	SARS1	chr1	109208918	109243182
SARS2_chr19_38910266_38935763	1/1	a0001	518	387	71	76	178	16	44	copy fasta	SARS2	chr19	38910266	38935763
SARS2_chr19_38910266_38935763	0/0	a0002	518	27	26	0	1	0	0	copy fasta	SARS2	chr19	38910266	38935763
SARS2_chr19_38910266_38935763	0/0	a0003	518	2	0	0	0	0	2	copy fasta	SARS2	chr19	38910266	38935763
SARS2_chr19_38910266_38935763	0/0	a0004	518	2	0	0	0	0	2	copy fasta	SARS2	chr19	38910266	38935763
SARS2_chr19_38910266_38935763	0/0	a0005	518	1	0	0	1	0	0	copy fasta	SARS2	chr19	38910266	38935763
SARS2_chr19_38910266_38935763	0/0	a0006	518	1	1	0	0	0	0	copy fasta	SARS2	chr19	38910266	38935763
SART1_chr11_65956734_65985137	1/1	a0001	800	220	86	30	70	7	25	copy fasta	SART1	chr11	65956734	65985137
SART1_chr11_65956734_65985137	0/0	a0002	800	151	5	38	87	5	16	copy fasta	SART1	chr11	65956734	65985137
SART1_chr11_65956734_65985137	0/0	a0003	800	3	0	0	3	0	0	copy fasta	SART1	chr11	65956734	65985137
SART1_chr11_65956734_65985137	0/0	a0004	800	2	0	0	2	0	0	copy fasta	SART1	chr11	65956734	65985137
SART1_chr11_65956734_65985137	0/0	a0005	800	2	0	0	2	0	0	copy fasta	SART1	chr11	65956734	65985137
SART1_chr11_65956734_65985137	0/0	a0006	800	1	0	0	0	0	1	copy fasta	SART1	chr11	65956734	65985137
SART1_chr11_65956734_65985137	0/0	a0007	800	1	1	0	0	0	0	copy fasta	SART1	chr11	65956734	65985137
SART1_chr11_65956734_65985137	0/0	a0008	800	1	0	0	1	0	0	copy fasta	SART1	chr11	65956734	65985137
SART1_chr11_65956734_65985137	0/0	a0009	800	1	1	0	0	0	0	copy fasta	SART1	chr11	65956734	65985137
SART1_chr11_65956734_65985137	0/0	a0010	800	1	0	0	1	0	0	copy fasta	SART1	chr11	65956734	65985137
SART1_chr11_65956734_65985137	0/0	a0011	800	1	1	0	0	0	0	copy fasta	SART1	chr11	65956734	65985137
SART3_chr12_108517214_108566173	1/1	a0001	963	262	82	32	110	9	27	copy fasta	SART3	chr12	108517214	108566173
SART3_chr12_108517214_108566173	0/0	a0002	963	122	11	25	70	3	13	copy fasta	SART3	chr12	108517214	108566173
SART3_chr12_108517214_108566173	0/0	a0003	963	5	0	0	5	0	0	copy fasta	SART3	chr12	108517214	108566173
SART3_chr12_108517214_108566173	0/0	a0004	963	2	2	0	0	0	0	copy fasta	SART3	chr12	108517214	108566173
SART3_chr12_108517214_108566173	0/0	a0005	963	1	0	1	0	0	0	copy fasta	SART3	chr12	108517214	108566173
SART3_chr12_108517214_108566173	0/0	a0006	963	1	0	0	1	0	0	copy fasta	SART3	chr12	108517214	108566173
SART3_chr12_108517214_108566173	0/0	a0007	963	1	1	0	0	0	0	copy fasta	SART3	chr12	108517214	108566173
SASH1_chr6_148337838_148557044	0/1	a0001	1247	152	55	28	34	7	27	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	1/0	a0002	1247	130	26	25	62	5	11	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	a0003	1249	16	0	5	5	2	4	copy fasta	SASH1	chr6	148337838	148557044
SASH1_chr6_148337838_148557044	0/0	a0004	1249	10	0	2	8	0	0	copy fasta	SASH1	chr6	148337838	148557044