JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SAXO1_chr9_18922650_19038209	0/0	a0004	474	13	11	2	0	0	0	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	a0005	474	6	0	0	6	0	0	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	a0006	474	4	0	0	0	0	4	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	a0007	474	3	0	1	0	2	0	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	a0008	474	3	3	0	0	0	0	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	a0009	474	3	3	0	0	0	0	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	a0010	474	3	2	0	1	0	0	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	a0011	322	2	0	0	2	0	0	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	a0012	474	2	2	0	0	0	0	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	a0013	474	2	0	0	2	0	0	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	a0014	322	1	0	0	1	0	0	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	a0015	474	1	0	1	0	0	0	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	a0016	474	1	1	0	0	0	0	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	a0017	474	1	1	0	0	0	0	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	a0018	474	1	1	0	0	0	0	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	a0019	474	1	1	0	0	0	0	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	a0020	474	1	1	0	0	0	0	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	a0021	452	1	0	0	0	0	1	copy fasta	SAXO1	chr9	18922650	19038209
SAXO1_chr9_18922650_19038209	0/0	a0022	474	1	0	0	0	0	1	copy fasta	SAXO1	chr9	18922650	19038209
SAXO2_chr15_82257818_82289927	1/0	a0001	458	150	5	30	101	2	11	copy fasta	SAXO2	chr15	82257818	82289927
SAXO2_chr15_82257818_82289927	0/0	a0002	458	114	45	14	45	3	7	copy fasta	SAXO2	chr15	82257818	82289927
SAXO2_chr15_82257818_82289927	0/0	a0003	458	82	12	8	39	5	18	copy fasta	SAXO2	chr15	82257818	82289927
SAXO2_chr15_82257818_82289927	0/1	a0004	458	33	10	9	4	5	4	copy fasta	SAXO2	chr15	82257818	82289927
SAXO2_chr15_82257818_82289927	0/0	a0005	458	5	5	0	0	0	0	copy fasta	SAXO2	chr15	82257818	82289927
SAXO2_chr15_82257818_82289927	0/0	a0006	458	4	0	0	4	0	0	copy fasta	SAXO2	chr15	82257818	82289927
SAXO2_chr15_82257818_82289927	0/0	a0007	458	4	0	3	0	1	0	copy fasta	SAXO2	chr15	82257818	82289927
SAXO2_chr15_82257818_82289927	0/0	a0008	458	4	4	0	0	0	0	copy fasta	SAXO2	chr15	82257818	82289927
SAXO2_chr15_82257818_82289927	0/0	a0009	458	2	0	0	2	0	0	copy fasta	SAXO2	chr15	82257818	82289927
SAXO2_chr15_82257818_82289927	0/0	a0010	458	2	2	0	0	0	0	copy fasta	SAXO2	chr15	82257818	82289927
SAXO2_chr15_82257818_82289927	0/0	a0011	458	2	2	0	0	0	0	copy fasta	SAXO2	chr15	82257818	82289927
SAXO2_chr15_82257818_82289927	0/0	a0012	458	1	0	0	1	0	0	copy fasta	SAXO2	chr15	82257818	82289927
SAXO2_chr15_82257818_82289927	0/0	a0013	458	1	1	0	0	0	0	copy fasta	SAXO2	chr15	82257818	82289927
SAXO2_chr15_82257818_82289927	0/0	a0014	458	1	0	0	1	0	0	copy fasta	SAXO2	chr15	82257818	82289927
SAXO2_chr15_82257818_82289927	0/0	a0015	458	1	0	0	1	0	0	copy fasta	SAXO2	chr15	82257818	82289927
SAYSD1_chr6_39099063_39120186	1/1	a0001	183	451	96	79	208	18	48	copy fasta	SAYSD1	chr6	39099063	39120186
SAYSD1_chr6_39099063_39120186	0/0	a0002	177	3	0	0	3	0	0	copy fasta	SAYSD1	chr6	39099063	39120186
SAYSD1_chr6_39099063_39120186	0/0	a0003	183	2	1	1	0	0	0	copy fasta	SAYSD1	chr6	39099063	39120186
SAYSD1_chr6_39099063_39120186	0/0	a0004	183	2	2	0	0	0	0	copy fasta	SAYSD1	chr6	39099063	39120186
SAYSD1_chr6_39099063_39120186	0/0	a0005	183	1	1	0	0	0	0	copy fasta	SAYSD1	chr6	39099063	39120186
SAYSD1_chr6_39099063_39120186	0/0	a0006	183	1	0	0	1	0	0	copy fasta	SAYSD1	chr6	39099063	39120186
SBDS_chr7_66982680_67000586	1/1	a0001	250	436	94	78	198	16	48	copy fasta	SBDS	chr7	66982680	67000586
SBDS_chr7_66982680_67000586	0/0	a0002	250	2	0	2	0	0	0	copy fasta	SBDS	chr7	66982680	67000586
SBF1_chr22_50440000_50480035	1/1	a0001	1893	362	81	68	154	16	41	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	a0002	1893	7	6	1	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	a0003	1893	3	0	0	3	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	a0004	1893	2	1	1	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	a0005	1893	2	2	0	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	a0006	1893	1	0	1	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	a0007	1893	1	1	0	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	a0008	1893	1	0	0	0	0	1	copy fasta	SBF1	chr22	50440000	50480035