JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SBF1_chr22_50440000_50480035	0/0	a0009	1893	1	1	0	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	a0010	1893	1	0	1	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	a0011	1893	1	0	1	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	a0012	1893	1	0	0	0	0	1	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	a0013	1893	1	0	1	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	a0014	1893	1	0	1	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	a0015	1893	1	0	0	0	0	1	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	a0016	1893	1	0	0	1	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	a0017	1893	1	0	0	1	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	a0018	1893	1	0	0	1	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	a0019	1893	1	0	0	1	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	a0020	1893	1	1	0	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	a0021	1893	1	0	0	1	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	a0022	1893	1	1	0	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	a0023	1889	1	0	0	1	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	a0024	1082	1	0	0	1	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	a0025	1893	1	0	0	0	0	1	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	a0026	1893	1	0	0	1	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	a0027	1893	1	0	0	1	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	a0028	1893	1	0	0	0	0	1	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	a0029	1893	1	0	1	0	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	a0030	1893	1	0	0	1	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF1_chr22_50440000_50480035	0/0	a0031	1893	1	0	0	1	0	0	copy fasta	SBF1	chr22	50440000	50480035
SBF2_chr11_9773668_10299219	1/1	a0001	1849	177	55	43	50	6	21	copy fasta	SBF2	chr11	9773668	10299219
SBF2_chr11_9773668_10299219	0/0	a0002	1849	22	1	9	8	2	2	copy fasta	SBF2	chr11	9773668	10299219
SBF2_chr11_9773668_10299219	0/0	a0003	1129	11	0	4	7	0	0	copy fasta	SBF2	chr11	9773668	10299219
SBF2_chr11_9773668_10299219	0/0	a0004	1849	3	3	0	0	0	0	copy fasta	SBF2	chr11	9773668	10299219
SBF2_chr11_9773668_10299219	0/0	a0005	1849	3	0	3	0	0	0	copy fasta	SBF2	chr11	9773668	10299219
SBF2_chr11_9773668_10299219	0/0	a0006	1849	2	2	0	0	0	0	copy fasta	SBF2	chr11	9773668	10299219
SBF2_chr11_9773668_10299219	0/0	a0007	1849	2	0	2	0	0	0	copy fasta	SBF2	chr11	9773668	10299219
SBF2_chr11_9773668_10299219	0/0	a0008	1849	1	1	0	0	0	0	copy fasta	SBF2	chr11	9773668	10299219
SBF2_chr11_9773668_10299219	0/0	a0009	1849	1	0	0	0	0	1	copy fasta	SBF2	chr11	9773668	10299219
SBF2_chr11_9773668_10299219	0/0	a0010	1849	1	0	0	1	0	0	copy fasta	SBF2	chr11	9773668	10299219
SBF2_chr11_9773668_10299219	0/0	a0011	1849	1	0	1	0	0	0	copy fasta	SBF2	chr11	9773668	10299219
SBK1_chr16_28287525_28328849	1/1	a0001	424	379	96	68	165	14	34	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	a0002	416	3	0	0	3	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	a0003	424	1	0	1	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK1_chr16_28287525_28328849	0/0	a0004	424	1	0	1	0	0	0	copy fasta	SBK1	chr16	28287525	28328849
SBK2_chr19_55523611_55542133	0/0	a0000	0	35	5	6	15	0	9	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/1	a0001	348	325	75	68	132	18	31	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	a0002	348	37	2	4	25	0	6	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	a0003	348	24	3	2	18	0	1	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	1/0	a0004	348	2	0	0	0	0	1	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	a0005	348	2	2	0	0	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	a0006	348	2	0	0	2	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	a0007	348	1	1	0	0	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	a0008	348	1	1	0	0	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	a0009	348	1	0	0	1	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	a0010	348	1	1	0	0	0	0	copy fasta	SBK2	chr19	55523611	55542133
SBK2_chr19_55523611_55542133	0/0	a0011	348	1	0	0	1	0	0	copy fasta	SBK2	chr19	55523611	55542133