JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SBSN_chr19_35518367_35533311	0/0	a0024	572	1	1	0	0	0	0	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	a0025	590	1	1	0	0	0	0	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	a0026	590	1	0	0	0	0	1	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	a0027	590	1	0	0	0	0	1	copy fasta	SBSN	chr19	35518367	35533311
SBSN_chr19_35518367_35533311	0/0	a0028	590	1	0	0	1	0	0	copy fasta	SBSN	chr19	35518367	35533311
SBSPON_chr8_73059543_73098172	1/1	a0001	264	159	13	39	89	5	11	copy fasta	SBSPON	chr8	73059543	73098172
SBSPON_chr8_73059543_73098172	0/0	a0002	264	113	27	23	35	3	25	copy fasta	SBSPON	chr8	73059543	73098172
SBSPON_chr8_73059543_73098172	0/0	a0003	264	83	39	13	19	6	6	copy fasta	SBSPON	chr8	73059543	73098172
SBSPON_chr8_73059543_73098172	0/0	a0004	264	55	15	5	33	0	2	copy fasta	SBSPON	chr8	73059543	73098172
SBSPON_chr8_73059543_73098172	0/0	a0005	264	2	0	0	2	0	0	copy fasta	SBSPON	chr8	73059543	73098172
SBSPON_chr8_73059543_73098172	0/0	a0006	264	2	2	0	0	0	0	copy fasta	SBSPON	chr8	73059543	73098172
SC5D_chr11_121287771_121318410	1/1	a0001	299	420	96	69	197	12	44	copy fasta	SC5D	chr11	121287771	121318410
SC5D_chr11_121287771_121318410	0/0	a0002	299	1	0	0	1	0	0	copy fasta	SC5D	chr11	121287771	121318410
SC5D_chr11_121287771_121318410	0/0	a0003	299	1	0	1	0	0	0	copy fasta	SC5D	chr11	121287771	121318410
SC5D_chr11_121287771_121318410	0/0	a0004	299	1	1	0	0	0	0	copy fasta	SC5D	chr11	121287771	121318410
SC5D_chr11_121287771_121318410	0/0	a0005	299	1	1	0	0	0	0	copy fasta	SC5D	chr11	121287771	121318410
SCAF11_chr12_45914131_45995574	1/1	a0001	1463	203	59	49	70	6	17	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	a0002	1463	103	9	14	66	6	8	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	a0003	1463	10	5	0	0	0	5	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	a0004	1463	5	0	2	0	0	3	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	a0005	1463	4	0	0	4	0	0	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	a0006	1463	3	0	0	1	0	2	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	a0007	1463	2	0	0	0	0	2	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	a0008	1463	2	2	0	0	0	0	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	a0009	1463	2	1	1	0	0	0	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	a0010	1463	1	0	0	1	0	0	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	a0011	1463	1	0	0	1	0	0	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	a0012	1463	1	0	0	0	0	1	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	a0013	1463	1	0	1	0	0	0	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	a0014	1463	1	0	1	0	0	0	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	a0015	1463	1	1	0	0	0	0	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	a0016	1463	1	1	0	0	0	0	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	a0017	1463	1	0	0	0	0	1	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	a0018	1463	1	0	0	0	0	1	copy fasta	SCAF11	chr12	45914131	45995574
SCAF11_chr12_45914131_45995574	0/0	a0019	1463	1	0	0	1	0	0	copy fasta	SCAF11	chr12	45914131	45995574
SCAF1_chr19_49637209_49663642	0/1	a0001	1310	172	73	30	39	5	24	copy fasta	SCAF1	chr19	49637209	49663642
SCAF1_chr19_49637209_49663642	0/0	a0002	1312	133	9	34	65	10	15	copy fasta	SCAF1	chr19	49637209	49663642
SCAF1_chr19_49637209_49663642	0/0	a0003	1310	22	0	12	10	0	0	copy fasta	SCAF1	chr19	49637209	49663642
SCAF1_chr19_49637209_49663642	0/0	a0004	1308	17	0	0	16	0	1	copy fasta	SCAF1	chr19	49637209	49663642
SCAF1_chr19_49637209_49663642	0/0	a0005	1314	7	0	0	7	0	0	copy fasta	SCAF1	chr19	49637209	49663642
SCAF1_chr19_49637209_49663642	0/0	a0006	651	4	1	2	1	0	0	copy fasta	SCAF1	chr19	49637209	49663642
SCAF1_chr19_49637209_49663642	0/0	a0007	1312	4	0	0	4	0	0	copy fasta	SCAF1	chr19	49637209	49663642
SCAF1_chr19_49637209_49663642	0/0	a0008	1312	3	0	0	3	0	0	copy fasta	SCAF1	chr19	49637209	49663642
SCAF1_chr19_49637209_49663642	1/0	a0009	1312	3	1	0	0	0	1	copy fasta	SCAF1	chr19	49637209	49663642
SCAF1_chr19_49637209_49663642	0/0	a0010	1312	2	0	1	0	1	0	copy fasta	SCAF1	chr19	49637209	49663642
SCAF1_chr19_49637209_49663642	0/0	a0011	1310	2	0	0	2	0	0	copy fasta	SCAF1	chr19	49637209	49663642
SCAF1_chr19_49637209_49663642	0/0	a0012	1310	1	1	0	0	0	0	copy fasta	SCAF1	chr19	49637209	49663642
SCAF1_chr19_49637209_49663642	0/0	a0013	1310	1	1	0	0	0	0	copy fasta	SCAF1	chr19	49637209	49663642
SCAF1_chr19_49637209_49663642	0/0	a0014	649	1	1	0	0	0	0	copy fasta	SCAF1	chr19	49637209	49663642
SCAF1_chr19_49637209_49663642	0/0	a0015	733	1	0	0	1	0	0	copy fasta	SCAF1	chr19	49637209	49663642