JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SCAF1_chr19_49637209_49663642	0/0	a0016	1312	1	1	0	0	0	0	copy fasta	SCAF1	chr19	49637209	49663642
SCAF1_chr19_49637209_49663642	0/0	a0017	1312	1	0	1	0	0	0	copy fasta	SCAF1	chr19	49637209	49663642
SCAF1_chr19_49637209_49663642	0/0	a0018	1312	1	0	0	1	0	0	copy fasta	SCAF1	chr19	49637209	49663642
SCAF1_chr19_49637209_49663642	0/0	a0019	1312	1	0	0	1	0	0	copy fasta	SCAF1	chr19	49637209	49663642
SCAF1_chr19_49637209_49663642	0/0	a0020	1310	1	0	0	0	0	1	copy fasta	SCAF1	chr19	49637209	49663642
SCAF1_chr19_49637209_49663642	0/0	a0021	1310	1	1	0	0	0	0	copy fasta	SCAF1	chr19	49637209	49663642
SCAF1_chr19_49637209_49663642	0/0	a0022	1306	1	1	0	0	0	0	copy fasta	SCAF1	chr19	49637209	49663642
SCAF1_chr19_49637209_49663642	0/0	a0023	1312	1	0	0	1	0	0	copy fasta	SCAF1	chr19	49637209	49663642
SCAF1_chr19_49637209_49663642	0/0	a0024	1312	1	0	0	1	0	0	copy fasta	SCAF1	chr19	49637209	49663642
SCAF4_chr21_31666000_31737118	1/1	a0001	1147	344	75	72	147	10	38	copy fasta	SCAF4	chr21	31666000	31737118
SCAF4_chr21_31666000_31737118	0/0	a0002	1147	3	0	2	0	0	1	copy fasta	SCAF4	chr21	31666000	31737118
SCAF4_chr21_31666000_31737118	0/0	a0003	1147	1	1	0	0	0	0	copy fasta	SCAF4	chr21	31666000	31737118
SCAF4_chr21_31666000_31737118	0/0	a0004	1147	1	0	0	0	0	1	copy fasta	SCAF4	chr21	31666000	31737118
SCAF4_chr21_31666000_31737118	0/0	a0005	1147	1	0	0	1	0	0	copy fasta	SCAF4	chr21	31666000	31737118
SCAF4_chr21_31666000_31737118	0/0	a0006	1147	1	0	0	1	0	0	copy fasta	SCAF4	chr21	31666000	31737118
SCAF4_chr21_31666000_31737118	0/0	a0007	1147	1	0	0	1	0	0	copy fasta	SCAF4	chr21	31666000	31737118
SCAF8_chr6_154728416_154839221	1/1	a0001	1271	270	79	62	86	11	30	copy fasta	SCAF8	chr6	154728416	154839221
SCAF8_chr6_154728416_154839221	0/0	a0002	1271	3	2	0	0	0	1	copy fasta	SCAF8	chr6	154728416	154839221
SCAF8_chr6_154728416_154839221	0/0	a0003	1271	3	3	0	0	0	0	copy fasta	SCAF8	chr6	154728416	154839221
SCAF8_chr6_154728416_154839221	0/0	a0004	1271	2	1	0	0	0	1	copy fasta	SCAF8	chr6	154728416	154839221
SCAF8_chr6_154728416_154839221	0/0	a0005	1271	2	1	0	0	1	0	copy fasta	SCAF8	chr6	154728416	154839221
SCAF8_chr6_154728416_154839221	0/0	a0006	1271	1	0	0	1	0	0	copy fasta	SCAF8	chr6	154728416	154839221
SCAF8_chr6_154728416_154839221	0/0	a0007	1271	1	0	0	1	0	0	copy fasta	SCAF8	chr6	154728416	154839221
SCAI_chr9_124937608_125148528	1/1	a0001	606	238	68	43	100	5	20	copy fasta	SCAI	chr9	124937608	125148528
SCAI_chr9_124937608_125148528	0/0	a0002	606	68	10	11	38	3	6	copy fasta	SCAI	chr9	124937608	125148528
SCAMP1_chr5_78355617_78485739	0/0	a0001	338	319	88	53	132	14	32	copy fasta	SCAMP1	chr5	78355617	78485739
SCAMP1_chr5_78355617_78485739	0/0	a0002	338	10	9	1	0	0	0	copy fasta	SCAMP1	chr5	78355617	78485739
SCAMP1_chr5_78355617_78485739	0/0	a0003	338	2	0	2	0	0	0	copy fasta	SCAMP1	chr5	78355617	78485739
SCAMP1_chr5_78355617_78485739	0/0	a0004	338	1	1	0	0	0	0	copy fasta	SCAMP1	chr5	78355617	78485739
SCAMP2_chr15_74838730_74878365	1/1	a0001	329	373	88	61	172	17	33	copy fasta	SCAMP2	chr15	74838730	74878365
SCAMP2_chr15_74838730_74878365	0/0	a0002	329	11	0	2	8	0	1	copy fasta	SCAMP2	chr15	74838730	74878365
SCAMP2_chr15_74838730_74878365	0/0	a0003	329	2	0	1	0	1	0	copy fasta	SCAMP2	chr15	74838730	74878365
SCAMP3_chr1_155250981_155267360	0/1	a0001	347	368	96	48	160	18	45	copy fasta	SCAMP3	chr1	155250981	155267360
SCAMP3_chr1_155250981_155267360	0/0	a0002	347	2	0	0	2	0	0	copy fasta	SCAMP3	chr1	155250981	155267360
SCAMP3_chr1_155250981_155267360	0/0	a0003	347	1	0	0	0	0	1	copy fasta	SCAMP3	chr1	155250981	155267360
SCAMP3_chr1_155250981_155267360	0/0	a0004	347	1	0	1	0	0	0	copy fasta	SCAMP3	chr1	155250981	155267360
SCAMP3_chr1_155250981_155267360	0/0	a0005	347	1	0	0	1	0	0	copy fasta	SCAMP3	chr1	155250981	155267360
SCAMP3_chr1_155250981_155267360	0/0	a0006	347	1	0	1	0	0	0	copy fasta	SCAMP3	chr1	155250981	155267360
SCAMP3_chr1_155250981_155267360	0/0	a0007	347	1	0	0	1	0	0	copy fasta	SCAMP3	chr1	155250981	155267360
SCAMP4_chr19_1900399_1931013	1/1	a0001	229	426	94	76	192	14	48	copy fasta	SCAMP4	chr19	1900399	1931013
SCAMP4_chr19_1900399_1931013	0/0	a0002	229	8	1	3	0	2	2	copy fasta	SCAMP4	chr19	1900399	1931013
SCAMP4_chr19_1900399_1931013	0/0	a0003	229	2	0	0	2	0	0	copy fasta	SCAMP4	chr19	1900399	1931013
SCAMP4_chr19_1900399_1931013	0/0	a0004	229	2	0	0	0	2	0	copy fasta	SCAMP4	chr19	1900399	1931013
SCAMP4_chr19_1900399_1931013	0/0	a0005	229	1	1	0	0	0	0	copy fasta	SCAMP4	chr19	1900399	1931013
SCAMP4_chr19_1900399_1931013	0/0	a0006	229	1	0	1	0	0	0	copy fasta	SCAMP4	chr19	1900399	1931013
SCAMP4_chr19_1900399_1931013	0/0	a0007	229	1	0	0	1	0	0	copy fasta	SCAMP4	chr19	1900399	1931013
SCAMP4_chr19_1900399_1931013	0/0	a0008	229	1	0	0	1	0	0	copy fasta	SCAMP4	chr19	1900399	1931013
SCAMP5_chr15_74990563_75026495	1/1	a0001	235	370	86	66	162	16	38	copy fasta	SCAMP5	chr15	74990563	75026495
SCAND1_chr20_35948624_35959502	1/1	a0001	179	374	86	74	154	14	44	copy fasta	SCAND1	chr20	35948624	35959502
SCAND3_chr6_28565535_28592298	0/1	a0001	1325	408	75	72	204	16	40	copy fasta	SCAND3	chr6	28565535	28592298