JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SCAND3_chr6_28565535_28592298	0/0	a0002	1325	11	8	3	0	0	0	copy fasta	SCAND3	chr6	28565535	28592298
SCAND3_chr6_28565535_28592298	0/0	a0003	1325	5	5	0	0	0	0	copy fasta	SCAND3	chr6	28565535	28592298
SCAND3_chr6_28565535_28592298	0/0	a0004	1325	2	0	0	2	0	0	copy fasta	SCAND3	chr6	28565535	28592298
SCAND3_chr6_28565535_28592298	0/0	a0005	1325	1	0	0	1	0	0	copy fasta	SCAND3	chr6	28565535	28592298
SCAND3_chr6_28565535_28592298	0/0	a0006	1325	1	0	1	0	0	0	copy fasta	SCAND3	chr6	28565535	28592298
SCAND3_chr6_28565535_28592298	0/0	a0007	1325	1	0	0	1	0	0	copy fasta	SCAND3	chr6	28565535	28592298
SCAND3_chr6_28565535_28592298	0/0	a0008	1325	1	0	0	0	0	1	copy fasta	SCAND3	chr6	28565535	28592298
SCAND3_chr6_28565535_28592298	0/0	a0009	1325	1	0	0	0	0	1	copy fasta	SCAND3	chr6	28565535	28592298
SCAPER_chr15_76342904_76910340	1/1	a0001	1400	178	56	31	67	8	14	copy fasta	SCAPER	chr15	76342904	76910340
SCAPER_chr15_76342904_76910340	0/0	a0002	1399	83	9	15	48	3	8	copy fasta	SCAPER	chr15	76342904	76910340
SCAPER_chr15_76342904_76910340	0/0	a0003	1399	26	24	1	0	0	1	copy fasta	SCAPER	chr15	76342904	76910340
SCAPER_chr15_76342904_76910340	0/0	a0004	1400	5	0	2	1	0	2	copy fasta	SCAPER	chr15	76342904	76910340
SCAPER_chr15_76342904_76910340	0/0	a0005	1399	3	0	0	3	0	0	copy fasta	SCAPER	chr15	76342904	76910340
SCAPER_chr15_76342904_76910340	0/0	a0006	1400	3	3	0	0	0	0	copy fasta	SCAPER	chr15	76342904	76910340
SCAPER_chr15_76342904_76910340	0/0	a0007	1400	3	3	0	0	0	0	copy fasta	SCAPER	chr15	76342904	76910340
SCAPER_chr15_76342904_76910340	0/0	a0008	1399	2	0	1	0	0	1	copy fasta	SCAPER	chr15	76342904	76910340
SCAPER_chr15_76342904_76910340	0/0	a0009	1400	2	2	0	0	0	0	copy fasta	SCAPER	chr15	76342904	76910340
SCAPER_chr15_76342904_76910340	0/0	a0010	1399	1	0	0	0	1	0	copy fasta	SCAPER	chr15	76342904	76910340
SCAPER_chr15_76342904_76910340	0/0	a0011	1399	1	0	0	1	0	0	copy fasta	SCAPER	chr15	76342904	76910340
SCAPER_chr15_76342904_76910340	0/0	a0012	1399	1	0	0	1	0	0	copy fasta	SCAPER	chr15	76342904	76910340
SCAPER_chr15_76342904_76910340	0/0	a0013	1400	1	0	1	0	0	0	copy fasta	SCAPER	chr15	76342904	76910340
SCAPER_chr15_76342904_76910340	0/0	a0014	1400	1	0	1	0	0	0	copy fasta	SCAPER	chr15	76342904	76910340
SCAPER_chr15_76342904_76910340	0/0	a0015	1400	1	0	0	1	0	0	copy fasta	SCAPER	chr15	76342904	76910340
SCAPER_chr15_76342904_76910340	0/0	a0016	1400	1	1	0	0	0	0	copy fasta	SCAPER	chr15	76342904	76910340
SCAP_chr3_47408681_47480941	1/0	a0001	1279	176	67	27	57	7	17	copy fasta	SCAP	chr3	47408681	47480941
SCAP_chr3_47408681_47480941	0/1	a0002	1279	113	15	30	46	3	18	copy fasta	SCAP	chr3	47408681	47480941
SCAP_chr3_47408681_47480941	0/0	a0003	1279	3	0	0	3	0	0	copy fasta	SCAP	chr3	47408681	47480941
SCAP_chr3_47408681_47480941	0/0	a0004	1279	2	0	0	2	0	0	copy fasta	SCAP	chr3	47408681	47480941
SCAP_chr3_47408681_47480941	0/0	a0005	1279	2	0	0	2	0	0	copy fasta	SCAP	chr3	47408681	47480941
SCAP_chr3_47408681_47480941	0/0	a0006	1279	1	0	0	0	0	1	copy fasta	SCAP	chr3	47408681	47480941
SCAP_chr3_47408681_47480941	0/0	a0007	1279	1	0	0	1	0	0	copy fasta	SCAP	chr3	47408681	47480941
SCAP_chr3_47408681_47480941	0/0	a0008	1279	1	0	1	0	0	0	copy fasta	SCAP	chr3	47408681	47480941
SCAP_chr3_47408681_47480941	0/0	a0009	1279	1	0	0	1	0	0	copy fasta	SCAP	chr3	47408681	47480941
SCAP_chr3_47408681_47480941	0/0	a0010	1279	1	0	0	1	0	0	copy fasta	SCAP	chr3	47408681	47480941
SCAP_chr3_47408681_47480941	0/0	a0011	1279	1	0	0	1	0	0	copy fasta	SCAP	chr3	47408681	47480941
SCAP_chr3_47408681_47480941	0/0	a0012	1279	1	0	0	1	0	0	copy fasta	SCAP	chr3	47408681	47480941
SCAP_chr3_47408681_47480941	0/0	a0013	1279	1	0	0	1	0	0	copy fasta	SCAP	chr3	47408681	47480941
SCARA3_chr8_27628902_27678018	1/1	a0001	606	322	84	66	122	11	37	copy fasta	SCARA3	chr8	27628902	27678018
SCARA3_chr8_27628902_27678018	0/0	a0002	606	47	3	1	37	1	5	copy fasta	SCARA3	chr8	27628902	27678018
SCARA3_chr8_27628902_27678018	0/0	a0003	606	27	0	1	25	0	1	copy fasta	SCARA3	chr8	27628902	27678018
SCARA3_chr8_27628902_27678018	0/0	a0004	606	2	0	0	2	0	0	copy fasta	SCARA3	chr8	27628902	27678018
SCARA3_chr8_27628902_27678018	0/0	a0005	606	2	0	0	2	0	0	copy fasta	SCARA3	chr8	27628902	27678018
SCARA3_chr8_27628902_27678018	0/0	a0006	606	2	0	2	0	0	0	copy fasta	SCARA3	chr8	27628902	27678018
SCARA3_chr8_27628902_27678018	0/0	a0007	606	2	2	0	0	0	0	copy fasta	SCARA3	chr8	27628902	27678018
SCARA3_chr8_27628902_27678018	0/0	a0008	606	1	1	0	0	0	0	copy fasta	SCARA3	chr8	27628902	27678018
SCARA3_chr8_27628902_27678018	0/0	a0009	606	1	0	0	1	0	0	copy fasta	SCARA3	chr8	27628902	27678018
SCARA3_chr8_27628902_27678018	0/0	a0010	606	1	0	0	1	0	0	copy fasta	SCARA3	chr8	27628902	27678018
SCARA3_chr8_27628902_27678018	0/0	a0011	606	1	0	0	0	0	1	copy fasta	SCARA3	chr8	27628902	27678018
SCARA5_chr8_27864883_27997673	1/1	a0001	495	237	66	44	80	12	33	copy fasta	SCARA5	chr8	27864883	27997673
SCARA5_chr8_27864883_27997673	0/0	a0002	495	47	7	4	31	2	3	copy fasta	SCARA5	chr8	27864883	27997673