JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SCART1_chr10_133448945_133474760	0/0	a0027	921	1	1	0	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	a0028	1027	1	0	0	1	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	a0029	1027	1	0	0	0	0	1	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	a0030	921	1	1	0	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	a0031	1027	1	1	0	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	a0032	921	1	0	1	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	a0033	1027	1	1	0	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	a0034	921	1	0	0	1	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	a0035	921	1	1	0	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	a0036	1027	1	1	0	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCART1_chr10_133448945_133474760	0/0	a0037	921	1	1	0	0	0	0	copy fasta	SCART1	chr10	133448945	133474760
SCCPDH_chr1_246719409_246773137	1/0	a0001	429	402	93	68	185	15	40	copy fasta	SCCPDH	chr1	246719409	246773137
SCCPDH_chr1_246719409_246773137	0/1	a0002	429	4	0	2	0	1	0	copy fasta	SCCPDH	chr1	246719409	246773137
SCCPDH_chr1_246719409_246773137	0/0	a0003	429	3	0	0	3	0	0	copy fasta	SCCPDH	chr1	246719409	246773137
SCCPDH_chr1_246719409_246773137	0/0	a0004	429	1	1	0	0	0	0	copy fasta	SCCPDH	chr1	246719409	246773137
SCD5_chr4_82624539_82803796	1/1	a0001	330	207	76	32	65	6	26	copy fasta	SCD5	chr4	82624539	82803796
SCD5_chr4_82624539_82803796	0/0	a0002	330	2	2	0	0	0	0	copy fasta	SCD5	chr4	82624539	82803796
SCD5_chr4_82624539_82803796	0/0	a0003	330	1	0	0	1	0	0	copy fasta	SCD5	chr4	82624539	82803796
SCD_chr10_100342233_100369826	1/1	a0001	359	263	60	37	115	9	40	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	a0002	359	156	32	29	80	5	10	copy fasta	SCD	chr10	100342233	100369826
SCD_chr10_100342233_100369826	0/0	a0003	359	1	0	0	1	0	0	copy fasta	SCD	chr10	100342233	100369826
SCEL_chr13_77530706_77650263	1/1	a0001	688	159	43	36	54	9	15	copy fasta	SCEL	chr13	77530706	77650263
SCEL_chr13_77530706_77650263	0/0	a0002	688	95	8	12	69	1	5	copy fasta	SCEL	chr13	77530706	77650263
SCEL_chr13_77530706_77650263	0/0	a0003	688	88	28	14	39	1	6	copy fasta	SCEL	chr13	77530706	77650263
SCEL_chr13_77530706_77650263	0/0	a0004	688	3	1	0	1	0	1	copy fasta	SCEL	chr13	77530706	77650263
SCEL_chr13_77530706_77650263	0/0	a0005	688	2	0	2	0	0	0	copy fasta	SCEL	chr13	77530706	77650263
SCEL_chr13_77530706_77650263	0/0	a0006	688	1	0	0	1	0	0	copy fasta	SCEL	chr13	77530706	77650263
SCEL_chr13_77530706_77650263	0/0	a0007	688	1	0	0	0	0	1	copy fasta	SCEL	chr13	77530706	77650263
SCEL_chr13_77530706_77650263	0/0	a0008	688	1	0	0	1	0	0	copy fasta	SCEL	chr13	77530706	77650263
SCEL_chr13_77530706_77650263	0/0	a0009	688	1	0	0	1	0	0	copy fasta	SCEL	chr13	77530706	77650263
SCEL_chr13_77530706_77650263	0/0	a0010	688	1	0	0	1	0	0	copy fasta	SCEL	chr13	77530706	77650263
SCEL_chr13_77530706_77650263	0/0	a0011	688	1	0	0	1	0	0	copy fasta	SCEL	chr13	77530706	77650263
SCEL_chr13_77530706_77650263	0/0	a0012	688	1	0	0	0	1	0	copy fasta	SCEL	chr13	77530706	77650263
SCEL_chr13_77530706_77650263	0/0	a0013	673	1	1	0	0	0	0	copy fasta	SCEL	chr13	77530706	77650263
SCEL_chr13_77530706_77650263	0/0	a0014	688	1	1	0	0	0	0	copy fasta	SCEL	chr13	77530706	77650263
SCFD1_chr14_30617319_30740850	0/0	a0001	642	200	62	27	92	3	16	copy fasta	SCFD1	chr14	30617319	30740850
SCFD1_chr14_30617319_30740850	1/1	a0002	642	120	20	29	50	5	14	copy fasta	SCFD1	chr14	30617319	30740850
SCFD1_chr14_30617319_30740850	0/0	a0003	643	5	5	0	0	0	0	copy fasta	SCFD1	chr14	30617319	30740850
SCFD1_chr14_30617319_30740850	0/0	a0004	642	1	0	0	1	0	0	copy fasta	SCFD1	chr14	30617319	30740850
SCFD1_chr14_30617319_30740850	0/0	a0005	642	1	0	0	1	0	0	copy fasta	SCFD1	chr14	30617319	30740850
SCFD1_chr14_30617319_30740850	0/0	a0006	642	1	1	0	0	0	0	copy fasta	SCFD1	chr14	30617319	30740850
SCFD2_chr4_52867982_53371061	0/0	a0001	684	127	48	22	40	3	14	copy fasta	SCFD2	chr4	52867982	53371061
SCFD2_chr4_52867982_53371061	0/0	a0002	684	24	7	6	5	3	3	copy fasta	SCFD2	chr4	52867982	53371061
SCFD2_chr4_52867982_53371061	0/0	a0003	684	5	5	0	0	0	0	copy fasta	SCFD2	chr4	52867982	53371061
SCFD2_chr4_52867982_53371061	0/0	a0004	684	2	0	0	2	0	0	copy fasta	SCFD2	chr4	52867982	53371061
SCFD2_chr4_52867982_53371061	0/0	a0005	684	2	2	0	0	0	0	copy fasta	SCFD2	chr4	52867982	53371061
SCFD2_chr4_52867982_53371061	0/0	a0006	660	1	0	0	1	0	0	copy fasta	SCFD2	chr4	52867982	53371061
SCFD2_chr4_52867982_53371061	0/0	a0007	684	1	0	0	0	0	1	copy fasta	SCFD2	chr4	52867982	53371061
SCG2_chr2_223591940_223607361	1/1	a0001	617	383	86	70	172	14	39	copy fasta	SCG2	chr2	223591940	223607361
SCG2_chr2_223591940_223607361	0/0	a0002	617	5	0	0	5	0	0	copy fasta	SCG2	chr2	223591940	223607361