JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SCG2_chr2_223591940_223607361	0/0	a0003	617	5	0	4	0	0	1	copy fasta	SCG2	chr2	223591940	223607361
SCG2_chr2_223591940_223607361	0/0	a0004	617	1	0	0	1	0	0	copy fasta	SCG2	chr2	223591940	223607361
SCG3_chr15_51676503_51726026	1/1	a0001	468	352	62	72	164	12	40	copy fasta	SCG3	chr15	51676503	51726026
SCG3_chr15_51676503_51726026	0/0	a0002	468	31	30	1	0	0	0	copy fasta	SCG3	chr15	51676503	51726026
SCG3_chr15_51676503_51726026	0/0	a0003	468	14	0	5	7	0	2	copy fasta	SCG3	chr15	51676503	51726026
SCG3_chr15_51676503_51726026	0/0	a0004	468	2	0	0	2	0	0	copy fasta	SCG3	chr15	51676503	51726026
SCG3_chr15_51676503_51726026	0/0	a0005	468	2	2	0	0	0	0	copy fasta	SCG3	chr15	51676503	51726026
SCG3_chr15_51676503_51726026	0/0	a0006	468	1	0	0	1	0	0	copy fasta	SCG3	chr15	51676503	51726026
SCG5_chr15_32636710_32702092	0/1	a0001	212	415	96	74	182	16	46	copy fasta	SCG5	chr15	32636710	32702092
SCGB1A1_chr11_62414033_62428195	1/1	a0001	91	447	96	80	207	18	44	copy fasta	SCGB1A1	chr11	62414033	62428195
SCGB1A1_chr11_62414033_62428195	0/0	a0002	91	1	0	0	1	0	0	copy fasta	SCGB1A1	chr11	62414033	62428195
SCGB1C1_chr11_188078_199575	0/0	a0001	95	245	70	47	96	9	23	copy fasta	SCGB1C1	chr11	188078	199575
SCGB1C1_chr11_188078_199575	0/0	a0002	95	109	20	21	46	9	13	copy fasta	SCGB1C1	chr11	188078	199575
SCGB1C2_chr17_132569_144067	0/0	a0001	95	333	58	61	162	14	38	copy fasta	SCGB1C2	chr17	132569	144067
SCGB1C2_chr17_132569_144067	0/0	a0002	95	59	24	13	14	2	6	copy fasta	SCGB1C2	chr17	132569	144067
SCGB1C2_chr17_132569_144067	0/0	a0003	95	5	5	0	0	0	0	copy fasta	SCGB1C2	chr17	132569	144067
SCGB1C2_chr17_132569_144067	0/0	a0004	95	2	2	0	0	0	0	copy fasta	SCGB1C2	chr17	132569	144067
SCGB1C2_chr17_132569_144067	0/0	a0005	95	1	1	0	0	0	0	copy fasta	SCGB1C2	chr17	132569	144067
SCGB1C2_chr17_132569_144067	0/0	a0006	56	1	1	0	0	0	0	copy fasta	SCGB1C2	chr17	132569	144067
SCGB1C2_chr17_132569_144067	0/0	a0007	95	1	1	0	0	0	0	copy fasta	SCGB1C2	chr17	132569	144067
SCGB1D1_chr11_62185216_62198539	1/1	a0001	90	417	90	74	193	18	40	copy fasta	SCGB1D1	chr11	62185216	62198539
SCGB1D1_chr11_62185216_62198539	0/0	a0002	90	5	5	0	0	0	0	copy fasta	SCGB1D1	chr11	62185216	62198539
SCGB1D1_chr11_62185216_62198539	0/0	a0003	90	1	0	0	1	0	0	copy fasta	SCGB1D1	chr11	62185216	62198539
SCGB1D1_chr11_62185216_62198539	0/0	a0004	90	1	1	0	0	0	0	copy fasta	SCGB1D1	chr11	62185216	62198539
SCGB1D2_chr11_62237239_62249812	0/0	a0001	90	232	18	27	153	5	29	copy fasta	SCGB1D2	chr11	62237239	62249812
SCGB1D2_chr11_62237239_62249812	1/1	a0002	90	201	77	57	43	13	9	copy fasta	SCGB1D2	chr11	62237239	62249812
SCGB1D2_chr11_62237239_62249812	0/0	a0003	90	2	0	0	2	0	0	copy fasta	SCGB1D2	chr11	62237239	62249812
SCGB1D2_chr11_62237239_62249812	0/0	a0004	90	1	1	0	0	0	0	copy fasta	SCGB1D2	chr11	62237239	62249812
SCGB1D4_chr11_62291281_62304075	1/1	a0001	83	430	98	72	198	18	42	copy fasta	SCGB1D4	chr11	62291281	62304075
SCGB2A1_chr11_62203673_62218943	1/1	a0001	95	441	95	80	202	18	44	copy fasta	SCGB2A1	chr11	62203673	62218943
SCGB2A1_chr11_62203673_62218943	0/0	a0002	95	1	1	0	0	0	0	copy fasta	SCGB2A1	chr11	62203673	62218943
SCGB2A2_chr11_62265158_62278160	0/0	a0000	0	1	0	0	0	0	1	copy fasta	SCGB2A2	chr11	62265158	62278160
SCGB2A2_chr11_62265158_62278160	1/1	a0001	93	386	91	80	160	18	35	copy fasta	SCGB2A2	chr11	62265158	62278160
SCGB2A2_chr11_62265158_62278160	0/0	a0002	93	2	0	0	2	0	0	copy fasta	SCGB2A2	chr11	62265158	62278160
SCGB2A2_chr11_62265158_62278160	0/0	a0003	93	1	1	0	0	0	0	copy fasta	SCGB2A2	chr11	62265158	62278160
SCGB2B2_chr19_34585644_34682159	1/1	a0001	96	353	66	64	180	10	31	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	a0002	96	14	13	1	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	a0003	18	1	1	0	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	a0004	96	1	0	1	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	a0005	96	1	0	0	0	0	1	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB3A1_chr5_180585105_180596499	1/1	a0001	104	470	98	80	226	16	48	copy fasta	SCGB3A1	chr5	180585105	180596499
SCGB3A2_chr5_147873711_147887191	1/1	a0001	93	424	98	74	190	16	44	copy fasta	SCGB3A2	chr5	147873711	147887191
SCGN_chr6_25647215_25706783	1/1	a0001	276	350	77	65	149	17	40	copy fasta	SCGN	chr6	25647215	25706783
SCGN_chr6_25647215_25706783	0/0	a0002	276	6	6	0	0	0	0	copy fasta	SCGN	chr6	25647215	25706783
SCGN_chr6_25647215_25706783	0/0	a0003	276	5	5	0	0	0	0	copy fasta	SCGN	chr6	25647215	25706783
SCGN_chr6_25647215_25706783	0/0	a0004	276	2	1	1	0	0	0	copy fasta	SCGN	chr6	25647215	25706783
SCGN_chr6_25647215_25706783	0/0	a0005	276	1	0	0	1	0	0	copy fasta	SCGN	chr6	25647215	25706783
SCGN_chr6_25647215_25706783	0/0	a0006	276	1	0	0	0	1	0	copy fasta	SCGN	chr6	25647215	25706783
SCGN_chr6_25647215_25706783	0/0	a0007	276	1	0	0	0	0	1	copy fasta	SCGN	chr6	25647215	25706783
SCGN_chr6_25647215_25706783	0/0	a0008	276	1	0	0	0	0	1	copy fasta	SCGN	chr6	25647215	25706783