JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SDC3_chr1_30864466_30913758	0/0	a0014	442	1	0	0	0	0	1	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	a0015	442	1	0	0	1	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC4_chr20_45320288_45353424	1/0	a0001	198	257	69	48	102	9	28	copy fasta	SDC4	chr20	45320288	45353424
SDC4_chr20_45320288_45353424	0/1	a0002	198	159	22	22	92	5	17	copy fasta	SDC4	chr20	45320288	45353424
SDC4_chr20_45320288_45353424	0/0	a0003	198	1	0	0	0	0	1	copy fasta	SDC4	chr20	45320288	45353424
SDC4_chr20_45320288_45353424	0/0	a0004	198	1	1	0	0	0	0	copy fasta	SDC4	chr20	45320288	45353424
SDCBP2_chr20_1304909_1334139	1/1	a0001	292	291	54	29	168	7	31	copy fasta	SDCBP2	chr20	1304909	1334139
SDCBP2_chr20_1304909_1334139	0/0	a0002	292	70	21	15	19	7	8	copy fasta	SDCBP2	chr20	1304909	1334139
SDCBP2_chr20_1304909_1334139	0/0	a0003	292	44	17	16	5	0	6	copy fasta	SDCBP2	chr20	1304909	1334139
SDCBP2_chr20_1304909_1334139	0/0	a0004	292	14	1	11	0	1	1	copy fasta	SDCBP2	chr20	1304909	1334139
SDCBP2_chr20_1304909_1334139	0/0	a0005	292	3	0	0	0	1	2	copy fasta	SDCBP2	chr20	1304909	1334139
SDCBP2_chr20_1304909_1334139	0/0	a0006	292	2	1	1	0	0	0	copy fasta	SDCBP2	chr20	1304909	1334139
SDCBP2_chr20_1304909_1334139	0/0	a0007	98	1	0	1	0	0	0	copy fasta	SDCBP2	chr20	1304909	1334139
SDCBP2_chr20_1304909_1334139	0/0	a0008	292	1	1	0	0	0	0	copy fasta	SDCBP2	chr20	1304909	1334139
SDCBP2_chr20_1304909_1334139	0/0	a0009	292	1	0	1	0	0	0	copy fasta	SDCBP2	chr20	1304909	1334139
SDCBP2_chr20_1304909_1334139	0/0	a0010	292	1	0	0	1	0	0	copy fasta	SDCBP2	chr20	1304909	1334139
SDCBP2_chr20_1304909_1334139	0/0	a0011	292	1	0	0	1	0	0	copy fasta	SDCBP2	chr20	1304909	1334139
SDCBP2_chr20_1304909_1334139	0/0	a0012	292	1	1	0	0	0	0	copy fasta	SDCBP2	chr20	1304909	1334139
SDCBP_chr8_58548261_58587858	1/1	a0001	298	377	86	62	179	14	34	copy fasta	SDCBP	chr8	58548261	58587858
SDCBP_chr8_58548261_58587858	0/0	a0002	298	9	0	0	9	0	0	copy fasta	SDCBP	chr8	58548261	58587858
SDCBP_chr8_58548261_58587858	0/0	a0003	298	1	1	0	0	0	0	copy fasta	SDCBP	chr8	58548261	58587858
SDCBP_chr8_58548261_58587858	0/0	a0004	298	1	1	0	0	0	0	copy fasta	SDCBP	chr8	58548261	58587858
SDCCAG8_chr1_243251041_243505091	0/1	a0001	713	134	55	30	28	4	16	copy fasta	SDCCAG8	chr1	243251041	243505091
SDCCAG8_chr1_243251041_243505091	0/0	a0002	713	51	12	12	10	1	16	copy fasta	SDCCAG8	chr1	243251041	243505091
SDCCAG8_chr1_243251041_243505091	0/0	a0003	713	1	0	0	0	1	0	copy fasta	SDCCAG8	chr1	243251041	243505091
SDCCAG8_chr1_243251041_243505091	0/0	a0004	713	1	1	0	0	0	0	copy fasta	SDCCAG8	chr1	243251041	243505091
SDCCAG8_chr1_243251041_243505091	0/0	a0005	713	1	1	0	0	0	0	copy fasta	SDCCAG8	chr1	243251041	243505091
SDCCAG8_chr1_243251041_243505091	0/0	a0006	713	1	1	0	0	0	0	copy fasta	SDCCAG8	chr1	243251041	243505091
SDE2_chr1_225977702_226004343	1/1	a0001	451	374	89	68	157	16	42	copy fasta	SDE2	chr1	225977702	226004343
SDE2_chr1_225977702_226004343	0/0	a0002	451	15	0	0	15	0	0	copy fasta	SDE2	chr1	225977702	226004343
SDE2_chr1_225977702_226004343	0/0	a0003	451	6	6	0	0	0	0	copy fasta	SDE2	chr1	225977702	226004343
SDE2_chr1_225977702_226004343	0/0	a0004	451	3	1	1	0	0	1	copy fasta	SDE2	chr1	225977702	226004343
SDE2_chr1_225977702_226004343	0/0	a0005	451	1	0	1	0	0	0	copy fasta	SDE2	chr1	225977702	226004343
SDE2_chr1_225977702_226004343	0/0	a0006	451	1	0	0	0	0	1	copy fasta	SDE2	chr1	225977702	226004343
SDE2_chr1_225977702_226004343	0/0	a0007	451	1	0	0	1	0	0	copy fasta	SDE2	chr1	225977702	226004343
SDE2_chr1_225977702_226004343	0/0	a0008	451	1	0	0	1	0	0	copy fasta	SDE2	chr1	225977702	226004343
SDF2L1_chr22_21637302_21649299	1/1	a0001	221	421	89	80	187	18	45	copy fasta	SDF2L1	chr22	21637302	21649299
SDF2L1_chr22_21637302_21649299	0/0	a0002	221	3	2	0	0	0	1	copy fasta	SDF2L1	chr22	21637302	21649299
SDF2L1_chr22_21637302_21649299	0/0	a0003	221	2	2	0	0	0	0	copy fasta	SDF2L1	chr22	21637302	21649299
SDF2L1_chr22_21637302_21649299	0/0	a0004	221	2	2	0	0	0	0	copy fasta	SDF2L1	chr22	21637302	21649299
SDF2L1_chr22_21637302_21649299	0/0	a0005	221	1	1	0	0	0	0	copy fasta	SDF2L1	chr22	21637302	21649299
SDF2L1_chr22_21637302_21649299	0/0	a0006	221	1	0	0	1	0	0	copy fasta	SDF2L1	chr22	21637302	21649299
SDF2_chr17_28643346_28666906	1/1	a0001	211	390	86	73	181	8	40	copy fasta	SDF2	chr17	28643346	28666906
SDF2_chr17_28643346_28666906	0/0	a0002	211	5	4	1	0	0	0	copy fasta	SDF2	chr17	28643346	28666906
SDF2_chr17_28643346_28666906	0/0	a0003	211	1	0	0	1	0	0	copy fasta	SDF2	chr17	28643346	28666906
SDF2_chr17_28643346_28666906	0/0	a0004	211	1	1	0	0	0	0	copy fasta	SDF2	chr17	28643346	28666906
SDF2_chr17_28643346_28666906	0/0	a0005	211	1	1	0	0	0	0	copy fasta	SDF2	chr17	28643346	28666906
SDF4_chr1_1211931_1237001	1/1	a0001	355	386	84	70	168	18	44	copy fasta	SDF4	chr1	1211931	1237001
SDF4_chr1_1211931_1237001	0/0	a0002	355	12	10	2	0	0	0	copy fasta	SDF4	chr1	1211931	1237001
SDF4_chr1_1211931_1237001	0/0	a0003	355	1	1	0	0	0	0	copy fasta	SDF4	chr1	1211931	1237001