JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SMG7_chr1_183467499_183559191	0/0	a0007	1187	2	1	1	0	0	0	copy fasta	SMG7	chr1	183467499	183559191
SMG7_chr1_183467499_183559191	0/0	a0008	1187	1	1	0	0	0	0	copy fasta	SMG7	chr1	183467499	183559191
SMG7_chr1_183467499_183559191	0/0	a0009	1187	1	0	0	1	0	0	copy fasta	SMG7	chr1	183467499	183559191
SMG7_chr1_183467499_183559191	0/0	a0010	1187	1	0	0	1	0	0	copy fasta	SMG7	chr1	183467499	183559191
SMG8_chr17_59205035_59220230	1/1	a0001	991	373	72	71	174	16	38	copy fasta	SMG8	chr17	59205035	59220230
SMG8_chr17_59205035_59220230	0/0	a0002	991	16	15	1	0	0	0	copy fasta	SMG8	chr17	59205035	59220230
SMG8_chr17_59205035_59220230	0/0	a0003	991	2	2	0	0	0	0	copy fasta	SMG8	chr17	59205035	59220230
SMG8_chr17_59205035_59220230	0/0	a0004	991	1	0	0	1	0	0	copy fasta	SMG8	chr17	59205035	59220230
SMG8_chr17_59205035_59220230	0/0	a0005	991	1	1	0	0	0	0	copy fasta	SMG8	chr17	59205035	59220230
SMG8_chr17_59205035_59220230	0/0	a0006	991	1	0	0	1	0	0	copy fasta	SMG8	chr17	59205035	59220230
SMG9_chr19_43722983_43759962	1/1	a0001	520	315	93	52	122	12	34	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	a0002	520	3	1	2	0	0	0	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	a0003	520	1	0	0	1	0	0	copy fasta	SMG9	chr19	43722983	43759962
SMG9_chr19_43722983_43759962	0/0	a0004	520	1	0	0	1	0	0	copy fasta	SMG9	chr19	43722983	43759962
SMIM10L1_chr12_11166194_11181016	0/1	a0001	68	397	90	74	176	14	42	copy fasta	SMIM10L1	chr12	11166194	11181016
SMIM10L2A_chrX_135416944_135433075	1/1	a0001	78	301	78	43	141	9	28	copy fasta	SMIM10L2A	chrX	135416944	135433075
SMIM10L2B_chrX_135089985_135103712	1/1	a0001	78	303	68	59	134	9	31	copy fasta	SMIM10L2B	chrX	135089985	135103712
SMIM10_chrX_134985991_134997473	1/1	a0001	83	322	74	53	149	13	31	copy fasta	SMIM10	chrX	134985991	134997473
SMIM11_chr21_34370507_34394151	0/1	a0001	58	126	34	35	30	6	20	copy fasta	SMIM11	chr21	34370507	34394151
SMIM11_chr21_34370507_34394151	0/0	a0002	58	3	2	1	0	0	0	copy fasta	SMIM11	chr21	34370507	34394151
SMIM12_chr1_34845362_34864749	1/1	a0001	92	382	100	80	140	16	44	copy fasta	SMIM12	chr1	34845362	34864749
SMIM13_chr6_11088834_11143733	1/1	a0001	91	400	90	70	176	16	46	copy fasta	SMIM13	chr6	11088834	11143733
SMIM14_chr4_39541336_39643865	1/1	a0001	99	344	78	66	146	8	44	copy fasta	SMIM14	chr4	39541336	39643865
SMIM15_chr5_61152704_61167468	1/1	a0001	74	363	93	64	148	16	40	copy fasta	SMIM15	chr5	61152704	61167468
SMIM15_chr5_61152704_61167468	0/0	a0002	74	2	2	0	0	0	0	copy fasta	SMIM15	chr5	61152704	61167468
SMIM15_chr5_61152704_61167468	0/0	a0003	74	1	1	0	0	0	0	copy fasta	SMIM15	chr5	61152704	61167468
SMIM17_chr19_56638159_56662247	1/1	a0001	118	416	97	80	177	18	42	copy fasta	SMIM17	chr19	56638159	56662247
SMIM17_chr19_56638159_56662247	0/0	a0002	118	1	1	0	0	0	0	copy fasta	SMIM17	chr19	56638159	56662247
SMIM17_chr19_56638159_56662247	0/0	a0003	118	1	0	0	1	0	0	copy fasta	SMIM17	chr19	56638159	56662247
SMIM18_chr8_30633580_30651064	1/1	a0001	95	428	96	76	195	14	45	copy fasta	SMIM18	chr8	30633580	30651064
SMIM18_chr8_30633580_30651064	0/0	a0002	95	1	0	0	0	0	1	copy fasta	SMIM18	chr8	30633580	30651064
SMIM18_chr8_30633580_30651064	0/0	a0003	95	1	0	0	1	0	0	copy fasta	SMIM18	chr8	30633580	30651064
SMIM19_chr8_42536585_42560195	1/1	a0001	107	384	94	68	172	12	36	copy fasta	SMIM19	chr8	42536585	42560195
SMIM1_chr1_3767749_3780956	1/1	a0001	78	420	90	84	176	18	50	copy fasta	SMIM1	chr1	3767749	3780956
SMIM20_chr4_25909220_25934812	1/1	a0001	67	419	97	71	189	16	44	copy fasta	SMIM20	chr4	25909220	25934812
SMIM20_chr4_25909220_25934812	0/0	a0002	67	18	0	7	11	0	0	copy fasta	SMIM20	chr4	25909220	25934812
SMIM20_chr4_25909220_25934812	0/0	a0003	67	1	1	0	0	0	0	copy fasta	SMIM20	chr4	25909220	25934812
SMIM21_chr18_75404476_75432703	1/1	a0001	101	429	92	76	197	16	46	copy fasta	SMIM21	chr18	75404476	75432703
SMIM21_chr18_75404476_75432703	0/0	a0002	101	2	2	0	0	0	0	copy fasta	SMIM21	chr18	75404476	75432703
SMIM21_chr18_75404476_75432703	0/0	a0003	101	1	0	0	1	0	0	copy fasta	SMIM21	chr18	75404476	75432703
SMIM22_chr16_4790369_4801491	1/1	a0001	88	392	81	72	176	18	43	copy fasta	SMIM22	chr16	4790369	4801491
SMIM22_chr16_4790369_4801491	0/0	a0002	88	5	5	0	0	0	0	copy fasta	SMIM22	chr16	4790369	4801491
SMIM22_chr16_4790369_4801491	0/0	a0003	93	2	2	0	0	0	0	copy fasta	SMIM22	chr16	4790369	4801491
SMIM22_chr16_4790369_4801491	0/0	a0004	88	2	0	0	0	0	2	copy fasta	SMIM22	chr16	4790369	4801491
SMIM22_chr16_4790369_4801491	0/0	a0005	88	1	0	0	0	0	1	copy fasta	SMIM22	chr16	4790369	4801491
SMIM23_chr5_171780817_171796136	1/1	a0001	172	414	75	84	191	16	46	copy fasta	SMIM23	chr5	171780817	171796136
SMIM23_chr5_171780817_171796136	0/0	a0002	172	15	13	2	0	0	0	copy fasta	SMIM23	chr5	171780817	171796136
SMIM23_chr5_171780817_171796136	0/0	a0003	172	1	0	0	1	0	0	copy fasta	SMIM23	chr5	171780817	171796136
SMIM24_chr19_3468986_3485525	1/0	a0001	130	411	92	75	186	11	46	copy fasta	SMIM24	chr19	3468986	3485525
SMIM24_chr19_3468986_3485525	0/0	a0002	130	6	6	0	0	0	0	copy fasta	SMIM24	chr19	3468986	3485525