JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SMYD4_chr17_1774485_1834902	0/0	a0015	804	8	3	2	2	0	1	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	a0016	804	6	5	1	0	0	0	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	a0017	804	4	4	0	0	0	0	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	a0018	804	2	0	2	0	0	0	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	a0019	804	2	1	0	0	0	1	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	a0020	804	2	0	0	0	2	0	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	a0021	804	2	2	0	0	0	0	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	a0022	804	1	0	1	0	0	0	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	a0023	804	1	1	0	0	0	0	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	a0024	804	1	0	0	0	0	1	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	a0025	804	1	0	0	0	0	1	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	a0026	804	1	0	0	0	0	1	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	a0027	804	1	0	0	0	0	1	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	a0028	804	1	0	1	0	0	0	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	a0029	804	1	0	1	0	0	0	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	a0030	804	1	1	0	0	0	0	copy fasta	SMYD4	chr17	1774485	1834902
SMYD4_chr17_1774485_1834902	0/0	a0031	804	1	1	0	0	0	0	copy fasta	SMYD4	chr17	1774485	1834902
SMYD5_chr2_73209245_73232221	1/1	a0001	418	369	96	66	155	14	36	copy fasta	SMYD5	chr2	73209245	73232221
SMYD5_chr2_73209245_73232221	0/0	a0002	418	1	0	0	1	0	0	copy fasta	SMYD5	chr2	73209245	73232221
SMYD5_chr2_73209245_73232221	0/0	a0003	418	1	0	1	0	0	0	copy fasta	SMYD5	chr2	73209245	73232221
SMYD5_chr2_73209245_73232221	0/0	a0004	418	1	0	1	0	0	0	copy fasta	SMYD5	chr2	73209245	73232221
SNAI1_chr20_49977980_49993886	1/0	a0001	264	314	22	51	192	15	33	copy fasta	SNAI1	chr20	49977980	49993886
SNAI1_chr20_49977980_49993886	0/1	a0002	264	113	58	19	25	1	9	copy fasta	SNAI1	chr20	49977980	49993886
SNAI1_chr20_49977980_49993886	0/0	a0003	264	11	9	2	0	0	0	copy fasta	SNAI1	chr20	49977980	49993886
SNAI1_chr20_49977980_49993886	0/0	a0004	264	1	0	0	1	0	0	copy fasta	SNAI1	chr20	49977980	49993886
SNAI1_chr20_49977980_49993886	0/0	a0005	264	1	1	0	0	0	0	copy fasta	SNAI1	chr20	49977980	49993886
SNAI2_chr8_48912598_48926429	1/1	a0001	268	398	90	82	164	16	44	copy fasta	SNAI2	chr8	48912598	48926429
SNAI3_chr16_88672688_88691507	1/1	a0001	292	377	76	76	157	18	48	copy fasta	SNAI3	chr16	88672688	88691507
SNAI3_chr16_88672688_88691507	0/0	a0002	292	6	6	0	0	0	0	copy fasta	SNAI3	chr16	88672688	88691507
SNAI3_chr16_88672688_88691507	0/0	a0003	292	4	4	0	0	0	0	copy fasta	SNAI3	chr16	88672688	88691507
SNAI3_chr16_88672688_88691507	0/0	a0004	292	3	0	0	3	0	0	copy fasta	SNAI3	chr16	88672688	88691507
SNAI3_chr16_88672688_88691507	0/0	a0005	292	2	0	2	0	0	0	copy fasta	SNAI3	chr16	88672688	88691507
SNAI3_chr16_88672688_88691507	0/0	a0006	292	2	0	2	0	0	0	copy fasta	SNAI3	chr16	88672688	88691507
SNAI3_chr16_88672688_88691507	0/0	a0007	264	1	0	0	1	0	0	copy fasta	SNAI3	chr16	88672688	88691507
SNAI3_chr16_88672688_88691507	0/0	a0008	292	1	1	0	0	0	0	copy fasta	SNAI3	chr16	88672688	88691507
SNAI3_chr16_88672688_88691507	0/0	a0009	292	1	1	0	0	0	0	copy fasta	SNAI3	chr16	88672688	88691507
SNAI3_chr16_88672688_88691507	0/0	a0010	292	1	1	0	0	0	0	copy fasta	SNAI3	chr16	88672688	88691507
SNAI3_chr16_88672688_88691507	0/0	a0011	292	1	1	0	0	0	0	copy fasta	SNAI3	chr16	88672688	88691507
SNAI3_chr16_88672688_88691507	0/0	a0012	292	1	0	0	1	0	0	copy fasta	SNAI3	chr16	88672688	88691507
SNAP23_chr15_42490634_42538058	1/1	a0001	211	306	94	72	96	10	32	copy fasta	SNAP23	chr15	42490634	42538058
SNAP23_chr15_42490634_42538058	0/0	a0002	211	2	0	0	2	0	0	copy fasta	SNAP23	chr15	42490634	42538058
SNAP25_chr20_10213830_10312418	1/1	a0001	206	340	90	68	138	12	30	copy fasta	SNAP25	chr20	10213830	10312418
SNAP29_chr22_20854007_20896214	1/1	a0001	258	362	89	75	142	12	42	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	a0002	258	17	0	3	14	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	a0003	258	2	2	0	0	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP29_chr22_20854007_20896214	0/0	a0004	258	1	1	0	0	0	0	copy fasta	SNAP29	chr22	20854007	20896214
SNAP47_chr1_227730435_227786226	0/0	a0001	419	148	39	37	48	9	15	copy fasta	SNAP47	chr1	227730435	227786226
SNAP47_chr1_227730435_227786226	1/1	a0002	419	118	35	21	39	5	16	copy fasta	SNAP47	chr1	227730435	227786226
SNAP47_chr1_227730435_227786226	0/0	a0003	419	87	12	13	51	1	10	copy fasta	SNAP47	chr1	227730435	227786226
SNAP47_chr1_227730435_227786226	0/0	a0004	419	23	0	0	21	2	0	copy fasta	SNAP47	chr1	227730435	227786226