JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SNAPC4_chr9_136370571_136405170	0/0	a0019	1468	1	0	0	1	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	a0020	1469	1	0	0	0	0	1	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	a0021	1469	1	0	1	0	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	a0022	1469	1	1	0	0	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	a0023	1469	1	0	0	0	0	1	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	a0024	1469	1	0	0	0	0	1	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/1	a0025	1469	1	0	0	0	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	a0026	1469	1	0	0	1	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	a0027	1469	1	1	0	0	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	a0028	1469	1	0	0	1	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	a0029	1469	1	1	0	0	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	a0030	1469	1	0	0	1	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	a0031	1469	1	0	1	0	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	a0032	1469	1	0	0	1	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	a0033	1469	1	0	0	1	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	a0034	1469	1	1	0	0	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	a0035	1471	1	1	0	0	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC4_chr9_136370571_136405170	0/0	a0036	1469	1	1	0	0	0	0	copy fasta	SNAPC4	chr9	136370571	136405170
SNAPC5_chr15_66488468_66502762	1/1	a0001	98	426	93	80	191	18	42	copy fasta	SNAPC5	chr15	66488468	66502762
SNAPC5_chr15_66488468_66502762	0/0	a0002	98	1	0	0	1	0	0	copy fasta	SNAPC5	chr15	66488468	66502762
SNAPC5_chr15_66488468_66502762	0/0	a0003	98	1	1	0	0	0	0	copy fasta	SNAPC5	chr15	66488468	66502762
SNAPIN_chr1_153653703_153666852	1/1	a0001	136	398	98	72	173	14	39	copy fasta	SNAPIN	chr1	153653703	153666852
SNAPIN_chr1_153653703_153666852	0/0	a0002	136	1	0	0	0	0	1	copy fasta	SNAPIN	chr1	153653703	153666852
SNAPIN_chr1_153653703_153666852	0/0	a0003	104	1	0	0	1	0	0	copy fasta	SNAPIN	chr1	153653703	153666852
SNCAIP_chr5_122307237_122469219	1/1	a0001	919	212	59	41	80	6	24	copy fasta	SNCAIP	chr5	122307237	122469219
SNCAIP_chr5_122307237_122469219	0/0	a0002	919	3	3	0	0	0	0	copy fasta	SNCAIP	chr5	122307237	122469219
SNCAIP_chr5_122307237_122469219	0/0	a0003	919	2	1	1	0	0	0	copy fasta	SNCAIP	chr5	122307237	122469219
SNCAIP_chr5_122307237_122469219	0/0	a0004	919	1	1	0	0	0	0	copy fasta	SNCAIP	chr5	122307237	122469219
SNCAIP_chr5_122307237_122469219	0/0	a0005	919	1	0	1	0	0	0	copy fasta	SNCAIP	chr5	122307237	122469219
SNCAIP_chr5_122307237_122469219	0/0	a0006	919	1	0	1	0	0	0	copy fasta	SNCAIP	chr5	122307237	122469219
SNCAIP_chr5_122307237_122469219	0/0	a0007	919	1	1	0	0	0	0	copy fasta	SNCAIP	chr5	122307237	122469219
SNCAIP_chr5_122307237_122469219	0/0	a0008	919	1	1	0	0	0	0	copy fasta	SNCAIP	chr5	122307237	122469219
SNCA_chr4_89719099_89842161	0/0	a0001	140	337	82	64	148	10	33	copy fasta	SNCA	chr4	89719099	89842161
SNCA_chr4_89719099_89842161	0/0	a0002	140	1	0	0	0	0	1	copy fasta	SNCA	chr4	89719099	89842161
SNCB_chr5_176615082_176635534	1/1	a0001	134	435	96	82	197	12	46	copy fasta	SNCB	chr5	176615082	176635534
SNCB_chr5_176615082_176635534	0/0	a0002	134	1	0	0	1	0	0	copy fasta	SNCB	chr5	176615082	176635534
SNCG_chr10_86953599_86968258	1/1	a0001	127	334	81	62	143	10	36	copy fasta	SNCG	chr10	86953599	86968258
SNCG_chr10_86953599_86968258	0/0	a0002	127	65	14	14	17	8	12	copy fasta	SNCG	chr10	86953599	86968258
SNCG_chr10_86953599_86968258	0/0	a0003	127	1	1	0	0	0	0	copy fasta	SNCG	chr10	86953599	86968258
SND1_chr7_127647194_128097593	1/1	a0001	910	248	70	50	82	14	30	copy fasta	SND1	chr7	127647194	128097593
SND1_chr7_127647194_128097593	0/0	a0002	910	8	0	0	8	0	0	copy fasta	SND1	chr7	127647194	128097593
SND1_chr7_127647194_128097593	0/0	a0003	917	4	0	0	0	0	4	copy fasta	SND1	chr7	127647194	128097593
SND1_chr7_127647194_128097593	0/0	a0004	910	1	0	0	1	0	0	copy fasta	SND1	chr7	127647194	128097593
SND1_chr7_127647194_128097593	0/0	a0005	910	1	0	0	1	0	0	copy fasta	SND1	chr7	127647194	128097593
SNED1_chr2_240993618_241100568	1/1	a0001	1413	133	19	20	54	8	30	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	a0002	1413	92	48	11	28	1	4	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	a0003	1413	33	1	3	27	1	1	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	a0004	1413	18	1	4	13	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	a0005	1413	16	0	3	13	0	0	copy fasta	SNED1	chr2	240993618	241100568
SNED1_chr2_240993618_241100568	0/0	a0006	1413	11	0	4	5	1	1	copy fasta	SNED1	chr2	240993618	241100568