JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SNX19_chr11_130861250_130921479	0/0	a0016	992	1	0	0	1	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	a0017	992	1	0	1	0	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	a0018	992	1	1	0	0	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	a0019	992	1	0	0	1	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	a0020	992	1	0	0	1	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	a0021	992	1	0	0	1	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	1/0	a0022	992	1	0	0	0	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	a0023	992	1	0	0	0	0	1	copy fasta	SNX19	chr11	130861250	130921479
SNX1_chr15_64090982_64149231	1/1	a0001	522	270	96	44	86	12	30	copy fasta	SNX1	chr15	64090982	64149231
SNX20_chr16_50666629_50686312	1/1	a0001	316	338	60	80	135	17	44	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	a0002	316	74	39	4	30	1	0	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	a0003	316	2	0	0	2	0	0	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	a0004	316	1	0	0	1	0	0	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	a0005	316	1	1	0	0	0	0	copy fasta	SNX20	chr16	50666629	50686312
SNX21_chr20_45828799_45848276	1/0	a0001	373	239	82	34	90	10	22	copy fasta	SNX21	chr20	45828799	45848276
SNX21_chr20_45828799_45848276	0/1	a0002	373	144	8	36	76	8	15	copy fasta	SNX21	chr20	45828799	45848276
SNX21_chr20_45828799_45848276	0/0	a0003	373	34	0	2	32	0	0	copy fasta	SNX21	chr20	45828799	45848276
SNX21_chr20_45828799_45848276	0/0	a0004	373	5	5	0	0	0	0	copy fasta	SNX21	chr20	45828799	45848276
SNX21_chr20_45828799_45848276	0/0	a0005	373	3	2	1	0	0	0	copy fasta	SNX21	chr20	45828799	45848276
SNX21_chr20_45828799_45848276	0/0	a0006	373	2	0	0	0	0	2	copy fasta	SNX21	chr20	45828799	45848276
SNX21_chr20_45828799_45848276	0/0	a0007	373	1	0	0	1	0	0	copy fasta	SNX21	chr20	45828799	45848276
SNX21_chr20_45828799_45848276	0/0	a0008	373	1	0	1	0	0	0	copy fasta	SNX21	chr20	45828799	45848276
SNX21_chr20_45828799_45848276	0/0	a0009	373	1	0	0	1	0	0	copy fasta	SNX21	chr20	45828799	45848276
SNX21_chr20_45828799_45848276	0/0	a0010	373	1	1	0	0	0	0	copy fasta	SNX21	chr20	45828799	45848276
SNX21_chr20_45828799_45848276	0/0	a0011	373	1	0	0	0	0	1	copy fasta	SNX21	chr20	45828799	45848276
SNX22_chr15_64146731_64162481	1/1	a0001	193	346	96	60	127	16	45	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	a0002	193	1	1	0	0	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	a0003	193	1	0	0	0	0	1	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	a0004	193	1	0	0	1	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	a0005	193	1	1	0	0	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX24_chr5_122840613_123014205	1/1	a0001	169	330	84	64	136	14	30	copy fasta	SNX24	chr5	122840613	123014205
SNX25_chr4_185204598_185368966	1/1	a0001	1004	235	56	51	92	11	23	copy fasta	SNX25	chr4	185204598	185368966
SNX25_chr4_185204598_185368966	0/0	a0002	1004	22	21	1	0	0	0	copy fasta	SNX25	chr4	185204598	185368966
SNX25_chr4_185204598_185368966	0/0	a0003	1004	5	5	0	0	0	0	copy fasta	SNX25	chr4	185204598	185368966
SNX25_chr4_185204598_185368966	0/0	a0004	1004	3	0	0	3	0	0	copy fasta	SNX25	chr4	185204598	185368966
SNX25_chr4_185204598_185368966	0/0	a0005	1004	2	0	1	0	0	1	copy fasta	SNX25	chr4	185204598	185368966
SNX25_chr4_185204598_185368966	0/0	a0006	1004	1	1	0	0	0	0	copy fasta	SNX25	chr4	185204598	185368966
SNX25_chr4_185204598_185368966	0/0	a0007	1004	1	1	0	0	0	0	copy fasta	SNX25	chr4	185204598	185368966
SNX25_chr4_185204598_185368966	0/0	a0008	1004	1	1	0	0	0	0	copy fasta	SNX25	chr4	185204598	185368966
SNX25_chr4_185204598_185368966	0/0	a0009	1004	1	0	1	0	0	0	copy fasta	SNX25	chr4	185204598	185368966
SNX25_chr4_185204598_185368966	0/0	a0010	1004	1	0	0	1	0	0	copy fasta	SNX25	chr4	185204598	185368966
SNX25_chr4_185204598_185368966	0/0	a0011	1004	1	0	1	0	0	0	copy fasta	SNX25	chr4	185204598	185368966
SNX25_chr4_185204598_185368966	0/0	a0012	1004	1	0	1	0	0	0	copy fasta	SNX25	chr4	185204598	185368966
SNX25_chr4_185204598_185368966	0/0	a0013	1004	1	0	0	0	1	0	copy fasta	SNX25	chr4	185204598	185368966
SNX25_chr4_185204598_185368966	0/0	a0014	1004	1	1	0	0	0	0	copy fasta	SNX25	chr4	185204598	185368966
SNX27_chr1_151607050_151704080	1/1	a0001	541	359	94	56	159	12	36	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	a0002	541	6	0	0	6	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	a0003	500	1	0	0	1	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX29_chr16_11971734_12579287	1/1	a0001	813	165	62	39	38	7	17	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	a0002	813	4	3	1	0	0	0	copy fasta	SNX29	chr16	11971734	12579287