JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SPAG11B_chr8_7445603_7468542	0/0	a0005	133	2	2	0	0	0	0	copy fasta	SPAG11B	chr8	7445603	7468542
SPAG11B_chr8_7445603_7468542	0/0	a0006	133	2	1	0	1	0	0	copy fasta	SPAG11B	chr8	7445603	7468542
SPAG11B_chr8_7445603_7468542	0/0	a0007	133	2	0	0	2	0	0	copy fasta	SPAG11B	chr8	7445603	7468542
SPAG11B_chr8_7445603_7468542	0/0	a0008	133	1	0	1	0	0	0	copy fasta	SPAG11B	chr8	7445603	7468542
SPAG11B_chr8_7445603_7468542	0/0	a0009	133	1	0	1	0	0	0	copy fasta	SPAG11B	chr8	7445603	7468542
SPAG16_chr2_213279464_214415501	0/0	a0001	631	34	23	3	4	0	4	copy fasta	SPAG16	chr2	213279464	214415501
SPAG16_chr2_213279464_214415501	0/0	a0002	631	20	9	4	6	1	0	copy fasta	SPAG16	chr2	213279464	214415501
SPAG16_chr2_213279464_214415501	0/0	a0003	631	18	4	3	8	1	2	copy fasta	SPAG16	chr2	213279464	214415501
SPAG16_chr2_213279464_214415501	0/0	a0004	631	4	4	0	0	0	0	copy fasta	SPAG16	chr2	213279464	214415501
SPAG16_chr2_213279464_214415501	0/0	a0005	631	3	3	0	0	0	0	copy fasta	SPAG16	chr2	213279464	214415501
SPAG16_chr2_213279464_214415501	0/0	a0006	631	2	2	0	0	0	0	copy fasta	SPAG16	chr2	213279464	214415501
SPAG16_chr2_213279464_214415501	0/0	a0007	631	1	1	0	0	0	0	copy fasta	SPAG16	chr2	213279464	214415501
SPAG16_chr2_213279464_214415501	0/0	a0008	631	1	1	0	0	0	0	copy fasta	SPAG16	chr2	213279464	214415501
SPAG16_chr2_213279464_214415501	0/0	a0009	631	1	0	0	1	0	0	copy fasta	SPAG16	chr2	213279464	214415501
SPAG16_chr2_213279464_214415501	0/0	a0010	631	1	0	0	1	0	0	copy fasta	SPAG16	chr2	213279464	214415501
SPAG16_chr2_213279464_214415501	0/0	a0011	631	1	1	0	0	0	0	copy fasta	SPAG16	chr2	213279464	214415501
SPAG17_chr1_117948590_118190228	1/0	a0001	2223	117	42	22	34	5	13	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	a0002	2223	49	0	4	37	0	8	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/1	a0003	2223	33	5	10	7	5	5	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	a0004	2223	23	3	2	16	1	1	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	a0005	2223	6	0	1	2	0	3	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	a0006	2223	4	0	3	0	1	0	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	a0007	2223	3	2	0	0	0	1	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	a0008	2223	3	3	0	0	0	0	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	a0009	2223	3	0	0	3	0	0	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	a0010	2223	3	0	3	0	0	0	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	a0011	2223	2	2	0	0	0	0	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	a0012	2223	2	2	0	0	0	0	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	a0013	2223	2	0	0	2	0	0	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	a0014	2223	2	2	0	0	0	0	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	a0015	2223	1	0	0	1	0	0	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	a0016	2223	1	0	0	0	0	1	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	a0017	2223	1	1	0	0	0	0	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	a0018	2223	1	1	0	0	0	0	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	a0019	2223	1	0	1	0	0	0	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	a0020	2223	1	0	1	0	0	0	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	a0021	2223	1	1	0	0	0	0	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	a0022	2223	1	0	0	0	0	1	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	a0023	2223	1	0	0	1	0	0	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	a0024	2223	1	0	1	0	0	0	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	a0025	2223	1	1	0	0	0	0	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	a0026	2223	1	1	0	0	0	0	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	a0027	2223	1	0	0	1	0	0	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	a0028	2223	1	0	0	0	0	1	copy fasta	SPAG17	chr1	117948590	118190228
SPAG1_chr8_100153587_100246904	0/1	a0001	926	160	47	33	59	6	14	copy fasta	SPAG1	chr8	100153587	100246904
SPAG1_chr8_100153587_100246904	1/0	a0002	926	130	27	17	67	1	17	copy fasta	SPAG1	chr8	100153587	100246904
SPAG1_chr8_100153587_100246904	0/0	a0003	927	36	5	15	0	7	9	copy fasta	SPAG1	chr8	100153587	100246904
SPAG1_chr8_100153587_100246904	0/0	a0004	927	20	0	1	19	0	0	copy fasta	SPAG1	chr8	100153587	100246904
SPAG1_chr8_100153587_100246904	0/0	a0005	926	6	0	0	6	0	0	copy fasta	SPAG1	chr8	100153587	100246904
SPAG1_chr8_100153587_100246904	0/0	a0006	926	3	3	0	0	0	0	copy fasta	SPAG1	chr8	100153587	100246904