JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
B4GALT1_chr9_33105642_33172336	0/0	a0005	398	1	1	0	0	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT1_chr9_33105642_33172336	0/0	a0006	398	1	1	0	0	0	0	copy fasta	B4GALT1	chr9	33105642	33172336
B4GALT2_chr1_43974210_43996168	0/0	a0000	0	7	0	3	3	0	1	copy fasta	B4GALT2	chr1	43974210	43996168
B4GALT2_chr1_43974210_43996168	1/1	a0001	372	353	90	64	149	14	34	copy fasta	B4GALT2	chr1	43974210	43996168
B4GALT2_chr1_43974210_43996168	0/0	a0002	372	44	2	4	36	0	2	copy fasta	B4GALT2	chr1	43974210	43996168
B4GALT2_chr1_43974210_43996168	0/0	a0003	372	1	0	1	0	0	0	copy fasta	B4GALT2	chr1	43974210	43996168
B4GALT2_chr1_43974210_43996168	0/0	a0004	372	1	0	0	0	0	1	copy fasta	B4GALT2	chr1	43974210	43996168
B4GALT3_chr1_161166310_161182507	1/1	a0001	393	373	72	68	172	18	41	copy fasta	B4GALT3	chr1	161166310	161182507
B4GALT3_chr1_161166310_161182507	0/0	a0002	393	1	0	0	0	0	1	copy fasta	B4GALT3	chr1	161166310	161182507
B4GALT4_chr3_119206742_119245878	1/1	a0001	344	295	66	53	134	15	25	copy fasta	B4GALT4	chr3	119206742	119245878
B4GALT4_chr3_119206742_119245878	0/0	a0002	344	138	27	23	72	1	15	copy fasta	B4GALT4	chr3	119206742	119245878
B4GALT4_chr3_119206742_119245878	0/0	a0003	344	2	0	0	0	0	2	copy fasta	B4GALT4	chr3	119206742	119245878
B4GALT4_chr3_119206742_119245878	0/0	a0004	344	1	1	0	0	0	0	copy fasta	B4GALT4	chr3	119206742	119245878
B4GALT5_chr20_49627945_49718878	1/1	a0001	388	331	77	50	165	11	26	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	a0002	388	26	0	4	20	0	2	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	a0003	388	6	1	4	0	1	0	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	a0004	388	1	0	0	1	0	0	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT6_chr18_31617246_31689581	1/1	a0001	382	298	73	57	132	10	24	copy fasta	B4GALT6	chr18	31617246	31689581
B4GALT6_chr18_31617246_31689581	0/0	a0002	382	5	5	0	0	0	0	copy fasta	B4GALT6	chr18	31617246	31689581
B4GALT6_chr18_31617246_31689581	0/0	a0003	382	1	1	0	0	0	0	copy fasta	B4GALT6	chr18	31617246	31689581
B4GALT6_chr18_31617246_31689581	0/0	a0004	382	1	0	1	0	0	0	copy fasta	B4GALT6	chr18	31617246	31689581
B4GALT6_chr18_31617246_31689581	0/0	a0005	382	1	1	0	0	0	0	copy fasta	B4GALT6	chr18	31617246	31689581
B4GALT7_chr5_177595132_177615330	1/1	a0001	327	454	96	85	208	18	45	copy fasta	B4GALT7	chr5	177595132	177615330
B4GALT7_chr5_177595132_177615330	0/0	a0002	327	1	0	1	0	0	0	copy fasta	B4GALT7	chr5	177595132	177615330
B4GALT7_chr5_177595132_177615330	0/0	a0003	327	1	0	0	1	0	0	copy fasta	B4GALT7	chr5	177595132	177615330
B4GALT7_chr5_177595132_177615330	0/0	a0004	327	1	0	0	0	0	1	copy fasta	B4GALT7	chr5	177595132	177615330
B4GALT7_chr5_177595132_177615330	0/0	a0005	327	1	0	0	1	0	0	copy fasta	B4GALT7	chr5	177595132	177615330
B4GAT1_chr11_66340374_66352629	1/1	a0001	415	410	88	74	192	18	36	copy fasta	B4GAT1	chr11	66340374	66352629
B4GAT1_chr11_66340374_66352629	0/0	a0002	415	1	1	0	0	0	0	copy fasta	B4GAT1	chr11	66340374	66352629
B4GAT1_chr11_66340374_66352629	0/0	a0003	415	1	1	0	0	0	0	copy fasta	B4GAT1	chr11	66340374	66352629
B9D1_chr17_19338175_19367723	1/1	a0001	204	351	90	59	144	10	46	copy fasta	B9D1	chr17	19338175	19367723
B9D1_chr17_19338175_19367723	0/0	a0002	204	3	2	1	0	0	0	copy fasta	B9D1	chr17	19338175	19367723
B9D2_chr19_41349417_41369149	0/1	a0001	175	220	64	42	78	6	29	copy fasta	B9D2	chr19	41349417	41369149
B9D2_chr19_41349417_41369149	1/0	a0002	175	137	17	32	68	6	13	copy fasta	B9D2	chr19	41349417	41369149
B9D2_chr19_41349417_41369149	0/0	a0003	175	2	0	0	2	0	0	copy fasta	B9D2	chr19	41349417	41369149
B9D2_chr19_41349417_41369149	0/0	a0004	175	1	1	0	0	0	0	copy fasta	B9D2	chr19	41349417	41369149
BAALC_chr8_103135725_103235305	1/1	a0001	145	323	71	62	130	16	42	copy fasta	BAALC	chr8	103135725	103235305
BAALC_chr8_103135725_103235305	0/0	a0002	145	9	9	0	0	0	0	copy fasta	BAALC	chr8	103135725	103235305
BAAT_chr9_101355417_101390006	0/1	a0001	418	206	27	35	114	11	18	copy fasta	BAAT	chr9	101355417	101390006
BAAT_chr9_101355417_101390006	1/0	a0002	418	130	32	19	59	2	17	copy fasta	BAAT	chr9	101355417	101390006
BAAT_chr9_101355417_101390006	0/0	a0003	418	70	21	13	25	1	10	copy fasta	BAAT	chr9	101355417	101390006
BAAT_chr9_101355417_101390006	0/0	a0004	418	5	5	0	0	0	0	copy fasta	BAAT	chr9	101355417	101390006
BAAT_chr9_101355417_101390006	0/0	a0005	418	3	3	0	0	0	0	copy fasta	BAAT	chr9	101355417	101390006
BAAT_chr9_101355417_101390006	0/0	a0006	418	1	0	1	0	0	0	copy fasta	BAAT	chr9	101355417	101390006
BAAT_chr9_101355417_101390006	0/0	a0007	418	1	0	0	0	0	1	copy fasta	BAAT	chr9	101355417	101390006
BAAT_chr9_101355417_101390006	0/0	a0008	418	1	1	0	0	0	0	copy fasta	BAAT	chr9	101355417	101390006
BAAT_chr9_101355417_101390006	0/0	a0009	418	1	1	0	0	0	0	copy fasta	BAAT	chr9	101355417	101390006
BABAM1_chr19_17262443_17284337	1/1	a0001	329	421	93	76	186	18	46	copy fasta	BABAM1	chr19	17262443	17284337
BABAM1_chr19_17262443_17284337	0/0	a0002	329	3	3	0	0	0	0	copy fasta	BABAM1	chr19	17262443	17284337
BABAM2_chr2_27885729_28343901	1/1	a0001	383	157	68	37	32	2	16	copy fasta	BABAM2	chr2	27885729	28343901