JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SPATA31E1_chr9_87877877_87893903	0/0	a0029	1445	1	1	0	0	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	a0030	1445	1	1	0	0	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	a0031	1445	1	0	1	0	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	a0032	1445	1	1	0	0	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	a0033	1445	1	1	0	0	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	a0034	1445	1	0	1	0	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	a0035	1445	1	1	0	0	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	a0036	1445	1	1	0	0	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31F1_chr9_34718053_34734488	0/1	a0001	1335	166	10	26	96	10	23	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	a0002	1335	114	10	32	59	5	8	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	a0003	1335	37	3	14	9	2	9	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	1/0	a0004	1335	32	28	3	0	0	0	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	a0005	1335	24	0	0	24	0	0	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	a0006	1335	20	18	2	0	0	0	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	a0007	1335	14	11	1	1	0	1	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	a0008	1335	7	0	0	7	0	0	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	a0009	1335	7	0	1	3	0	3	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	a0010	1335	5	5	0	0	0	0	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	a0011	1335	4	0	4	0	0	0	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	a0012	1335	3	3	0	0	0	0	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	a0013	1335	1	0	0	0	0	1	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	a0014	95	1	0	0	1	0	0	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	a0015	1335	1	0	1	0	0	0	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	a0016	1335	1	0	0	1	0	0	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	a0017	1335	1	1	0	0	0	0	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	a0018	1335	1	0	0	0	0	1	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	a0019	1335	1	0	1	0	0	0	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	a0020	1335	1	1	0	0	0	0	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	a0021	1335	1	1	0	0	0	0	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	a0022	1335	1	1	0	0	0	0	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	a0023	1335	1	0	0	1	0	0	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	a0024	1335	1	0	0	0	1	0	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	a0025	1335	1	1	0	0	0	0	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	a0026	1335	1	0	1	0	0	0	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	a0027	1335	1	1	0	0	0	0	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F3_chr9_34884066_34900764	1/0	a0001	208	170	56	23	72	4	14	copy fasta	SPATA31F3	chr9	34884066	34900764
SPATA31F3_chr9_34884066_34900764	0/0	a0002	208	102	16	21	46	3	16	copy fasta	SPATA31F3	chr9	34884066	34900764
SPATA31F3_chr9_34884066_34900764	0/1	a0003	208	100	7	7	72	7	6	copy fasta	SPATA31F3	chr9	34884066	34900764
SPATA31F3_chr9_34884066_34900764	0/0	a0004	128	43	0	21	13	2	7	copy fasta	SPATA31F3	chr9	34884066	34900764
SPATA31F3_chr9_34884066_34900764	0/0	a0005	208	13	9	3	0	0	1	copy fasta	SPATA31F3	chr9	34884066	34900764
SPATA31F3_chr9_34884066_34900764	0/0	a0006	208	5	4	1	0	0	0	copy fasta	SPATA31F3	chr9	34884066	34900764
SPATA31F3_chr9_34884066_34900764	0/0	a0007	208	1	0	0	1	0	0	copy fasta	SPATA31F3	chr9	34884066	34900764
SPATA32_chr17_45249393_45267094	1/1	a0001	384	307	87	43	146	10	19	copy fasta	SPATA32	chr17	45249393	45267094
SPATA32_chr17_45249393_45267094	0/0	a0002	384	104	6	25	50	4	19	copy fasta	SPATA32	chr17	45249393	45267094
SPATA32_chr17_45249393_45267094	0/0	a0003	384	3	3	0	0	0	0	copy fasta	SPATA32	chr17	45249393	45267094
SPATA33_chr16_89652836_89675458	1/1	a0001	140	409	94	69	180	17	47	copy fasta	SPATA33	chr16	89652836	89675458
SPATA33_chr16_89652836_89675458	0/0	a0002	140	6	5	1	0	0	0	copy fasta	SPATA33	chr16	89652836	89675458
SPATA33_chr16_89652836_89675458	0/0	a0003	140	3	0	2	1	0	0	copy fasta	SPATA33	chr16	89652836	89675458
SPATA33_chr16_89652836_89675458	0/0	a0004	140	1	1	0	0	0	0	copy fasta	SPATA33	chr16	89652836	89675458
SPATA33_chr16_89652836_89675458	0/0	a0005	140	1	0	0	0	1	0	copy fasta	SPATA33	chr16	89652836	89675458