JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SPATA33_chr16_89652836_89675458	0/0	a0006	140	1	0	0	1	0	0	copy fasta	SPATA33	chr16	89652836	89675458
SPATA33_chr16_89652836_89675458	0/0	a0007	140	1	0	0	0	0	1	copy fasta	SPATA33	chr16	89652836	89675458
SPATA3_chr2_230991121_231013040	0/0	a0001	183	108	11	19	59	7	12	copy fasta	SPATA3	chr2	230991121	231013040
SPATA3_chr2_230991121_231013040	1/1	a0002	192	105	21	19	51	1	11	copy fasta	SPATA3	chr2	230991121	231013040
SPATA3_chr2_230991121_231013040	0/0	a0003	192	79	26	15	25	4	9	copy fasta	SPATA3	chr2	230991121	231013040
SPATA3_chr2_230991121_231013040	0/0	a0004	183	58	9	11	29	3	6	copy fasta	SPATA3	chr2	230991121	231013040
SPATA3_chr2_230991121_231013040	0/0	a0005	183	57	5	5	41	1	5	copy fasta	SPATA3	chr2	230991121	231013040
SPATA3_chr2_230991121_231013040	0/0	a0006	192	24	10	7	4	0	3	copy fasta	SPATA3	chr2	230991121	231013040
SPATA3_chr2_230991121_231013040	0/0	a0007	192	2	2	0	0	0	0	copy fasta	SPATA3	chr2	230991121	231013040
SPATA3_chr2_230991121_231013040	0/0	a0008	183	1	0	0	1	0	0	copy fasta	SPATA3	chr2	230991121	231013040
SPATA3_chr2_230991121_231013040	0/0	a0009	183	1	1	0	0	0	0	copy fasta	SPATA3	chr2	230991121	231013040
SPATA3_chr2_230991121_231013040	0/0	a0010	192	1	1	0	0	0	0	copy fasta	SPATA3	chr2	230991121	231013040
SPATA45_chr1_212825141_212852649	0/0	a0000	0	11	1	2	5	0	3	copy fasta	SPATA45	chr1	212825141	212852649
SPATA45_chr1_212825141_212852649	0/0	a0001	98	248	77	34	103	12	22	copy fasta	SPATA45	chr1	212825141	212852649
SPATA45_chr1_212825141_212852649	1/1	a0002	98	126	16	28	59	4	17	copy fasta	SPATA45	chr1	212825141	212852649
SPATA45_chr1_212825141_212852649	0/0	a0003	36	17	0	0	17	0	0	copy fasta	SPATA45	chr1	212825141	212852649
SPATA46_chr1_162368203_162381854	0/1	a0001	261	459	87	82	227	13	49	copy fasta	SPATA46	chr1	162368203	162381854
SPATA46_chr1_162368203_162381854	1/0	a0002	261	15	13	0	0	0	1	copy fasta	SPATA46	chr1	162368203	162381854
SPATA46_chr1_162368203_162381854	0/0	a0003	261	1	0	1	0	0	0	copy fasta	SPATA46	chr1	162368203	162381854
SPATA46_chr1_162368203_162381854	0/0	a0004	261	1	0	0	1	0	0	copy fasta	SPATA46	chr1	162368203	162381854
SPATA46_chr1_162368203_162381854	0/0	a0005	261	1	0	1	0	0	0	copy fasta	SPATA46	chr1	162368203	162381854
SPATA46_chr1_162368203_162381854	0/0	a0006	261	1	0	0	0	1	0	copy fasta	SPATA46	chr1	162368203	162381854
SPATA48_chr7_50090883_50164256	0/1	a0001	438	138	43	28	48	7	11	copy fasta	SPATA48	chr7	50090883	50164256
SPATA48_chr7_50090883_50164256	0/0	a0002	438	89	17	23	26	6	17	copy fasta	SPATA48	chr7	50090883	50164256
SPATA48_chr7_50090883_50164256	1/0	a0003	438	66	15	15	20	3	12	copy fasta	SPATA48	chr7	50090883	50164256
SPATA48_chr7_50090883_50164256	0/0	a0004	438	26	16	0	2	0	8	copy fasta	SPATA48	chr7	50090883	50164256
SPATA48_chr7_50090883_50164256	0/0	a0005	438	2	0	0	2	0	0	copy fasta	SPATA48	chr7	50090883	50164256
SPATA48_chr7_50090883_50164256	0/0	a0006	438	2	0	2	0	0	0	copy fasta	SPATA48	chr7	50090883	50164256
SPATA48_chr7_50090883_50164256	0/0	a0007	438	1	0	1	0	0	0	copy fasta	SPATA48	chr7	50090883	50164256
SPATA48_chr7_50090883_50164256	0/0	a0008	438	1	1	0	0	0	0	copy fasta	SPATA48	chr7	50090883	50164256
SPATA48_chr7_50090883_50164256	0/0	a0009	438	1	0	0	0	0	1	copy fasta	SPATA48	chr7	50090883	50164256
SPATA48_chr7_50090883_50164256	0/0	a0010	438	1	0	1	0	0	0	copy fasta	SPATA48	chr7	50090883	50164256
SPATA48_chr7_50090883_50164256	0/0	a0011	438	1	0	0	0	0	1	copy fasta	SPATA48	chr7	50090883	50164256
SPATA4_chr4_176179579_176200585	1/1	a0001	305	433	84	72	218	15	42	copy fasta	SPATA4	chr4	176179579	176200585
SPATA4_chr4_176179579_176200585	0/0	a0002	281	15	0	10	0	3	2	copy fasta	SPATA4	chr4	176179579	176200585
SPATA4_chr4_176179579_176200585	0/0	a0003	305	4	4	0	0	0	0	copy fasta	SPATA4	chr4	176179579	176200585
SPATA4_chr4_176179579_176200585	0/0	a0004	305	3	3	0	0	0	0	copy fasta	SPATA4	chr4	176179579	176200585
SPATA4_chr4_176179579_176200585	0/0	a0005	305	1	1	0	0	0	0	copy fasta	SPATA4	chr4	176179579	176200585
SPATA5L1_chr15_45397336_45426415	0/0	a0001	753	216	26	35	138	3	14	copy fasta	SPATA5L1	chr15	45397336	45426415
SPATA5L1_chr15_45397336_45426415	1/1	a0002	753	99	7	26	36	4	24	copy fasta	SPATA5L1	chr15	45397336	45426415
SPATA5L1_chr15_45397336_45426415	0/0	a0003	753	60	54	5	0	0	1	copy fasta	SPATA5L1	chr15	45397336	45426415
SPATA5L1_chr15_45397336_45426415	0/0	a0004	753	5	0	0	5	0	0	copy fasta	SPATA5L1	chr15	45397336	45426415
SPATA5L1_chr15_45397336_45426415	0/0	a0005	753	3	3	0	0	0	0	copy fasta	SPATA5L1	chr15	45397336	45426415
SPATA5L1_chr15_45397336_45426415	0/0	a0006	753	2	0	1	0	1	0	copy fasta	SPATA5L1	chr15	45397336	45426415
SPATA5L1_chr15_45397336_45426415	0/0	a0007	753	1	1	0	0	0	0	copy fasta	SPATA5L1	chr15	45397336	45426415
SPATA5L1_chr15_45397336_45426415	0/0	a0008	753	1	0	0	1	0	0	copy fasta	SPATA5L1	chr15	45397336	45426415
SPATA5L1_chr15_45397336_45426415	0/0	a0009	753	1	0	0	0	0	1	copy fasta	SPATA5L1	chr15	45397336	45426415
SPATA5L1_chr15_45397336_45426415	0/0	a0010	753	1	1	0	0	0	0	copy fasta	SPATA5L1	chr15	45397336	45426415
SPATA5L1_chr15_45397336_45426415	0/0	a0011	753	1	0	1	0	0	0	copy fasta	SPATA5L1	chr15	45397336	45426415
SPATA5_chr4_122918078_123324433	1/1	a0001	893	225	51	41	92	14	25	copy fasta	SPATA5	chr4	122918078	123324433