JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
BAHCC1_chr17_81390457_81471331	0/0	a0050	2608	1	0	0	1	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	1/0	a0051	2608	1	0	0	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	a0052	2608	1	0	0	0	1	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	a0053	2604	1	1	0	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	a0054	2608	1	0	0	0	1	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	a0055	2608	1	0	1	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	a0056	2608	1	0	0	1	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHCC1_chr17_81390457_81471331	0/0	a0057	2612	1	1	0	0	0	0	copy fasta	BAHCC1	chr17	81390457	81471331
BAHD1_chr15_40435953_40473236	0/1	a0001	780	254	78	39	108	8	20	copy fasta	BAHD1	chr15	40435953	40473236
BAHD1_chr15_40435953_40473236	1/0	a0002	780	78	15	25	11	6	20	copy fasta	BAHD1	chr15	40435953	40473236
BAHD1_chr15_40435953_40473236	0/0	a0003	780	32	0	3	24	0	5	copy fasta	BAHD1	chr15	40435953	40473236
BAHD1_chr15_40435953_40473236	0/0	a0004	780	2	1	1	0	0	0	copy fasta	BAHD1	chr15	40435953	40473236
BAHD1_chr15_40435953_40473236	0/0	a0005	19	1	0	0	1	0	0	copy fasta	BAHD1	chr15	40435953	40473236
BAHD1_chr15_40435953_40473236	0/0	a0006	780	1	0	0	1	0	0	copy fasta	BAHD1	chr15	40435953	40473236
BAHD1_chr15_40435953_40473236	0/0	a0007	780	1	0	0	0	0	1	copy fasta	BAHD1	chr15	40435953	40473236
BAHD1_chr15_40435953_40473236	0/0	a0008	780	1	0	0	1	0	0	copy fasta	BAHD1	chr15	40435953	40473236
BAHD1_chr15_40435953_40473236	0/0	a0009	780	1	0	0	1	0	0	copy fasta	BAHD1	chr15	40435953	40473236
BAHD1_chr15_40435953_40473236	0/0	a0010	780	1	0	0	1	0	0	copy fasta	BAHD1	chr15	40435953	40473236
BAIAP2L1_chr7_98286650_98406090	1/1	a0001	511	283	86	40	111	10	34	copy fasta	BAIAP2L1	chr7	98286650	98406090
BAIAP2L1_chr7_98286650_98406090	0/0	a0002	511	8	0	0	8	0	0	copy fasta	BAIAP2L1	chr7	98286650	98406090
BAIAP2L1_chr7_98286650_98406090	0/0	a0003	511	2	2	0	0	0	0	copy fasta	BAIAP2L1	chr7	98286650	98406090
BAIAP2L1_chr7_98286650_98406090	0/0	a0004	50	1	0	0	1	0	0	copy fasta	BAIAP2L1	chr7	98286650	98406090
BAIAP2L1_chr7_98286650_98406090	0/0	a0005	511	1	0	1	0	0	0	copy fasta	BAIAP2L1	chr7	98286650	98406090
BAIAP2L1_chr7_98286650_98406090	0/0	a0006	511	1	1	0	0	0	0	copy fasta	BAIAP2L1	chr7	98286650	98406090
BAIAP2L1_chr7_98286650_98406090	0/0	a0007	511	1	1	0	0	0	0	copy fasta	BAIAP2L1	chr7	98286650	98406090
BAIAP2L1_chr7_98286650_98406090	0/0	a0008	511	1	0	1	0	0	0	copy fasta	BAIAP2L1	chr7	98286650	98406090
BAIAP2L2_chr22_38079900_38115684	0/0	a0001	529	5	2	0	1	0	2	copy fasta	BAIAP2L2	chr22	38079900	38115684
BAIAP2L2_chr22_38079900_38115684	1/1	a0002	529	4	0	1	0	0	1	copy fasta	BAIAP2L2	chr22	38079900	38115684
BAIAP2L2_chr22_38079900_38115684	0/0	a0003	518	3	0	1	1	1	0	copy fasta	BAIAP2L2	chr22	38079900	38115684
BAIAP2L2_chr22_38079900_38115684	0/0	a0004	532	2	0	2	0	0	0	copy fasta	BAIAP2L2	chr22	38079900	38115684
BAIAP2L2_chr22_38079900_38115684	0/0	a0005	529	1	0	0	0	1	0	copy fasta	BAIAP2L2	chr22	38079900	38115684
BAIAP2L2_chr22_38079900_38115684	0/0	a0006	529	1	0	1	0	0	0	copy fasta	BAIAP2L2	chr22	38079900	38115684
BAIAP2L2_chr22_38079900_38115684	0/0	a0007	521	1	0	0	0	0	1	copy fasta	BAIAP2L2	chr22	38079900	38115684
BAIAP2L2_chr22_38079900_38115684	0/0	a0008	529	1	0	1	0	0	0	copy fasta	BAIAP2L2	chr22	38079900	38115684
BAIAP2_chr17_81030151_81122434	1/1	a0001	534	303	85	54	113	11	38	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	a0002	534	72	6	26	31	1	8	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP2_chr17_81030151_81122434	0/0	a0003	534	1	1	0	0	0	0	copy fasta	BAIAP2	chr17	81030151	81122434
BAIAP3_chr16_1328645_1354439	0/1	a0001	1152	309	76	59	118	17	38	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	a0002	1152	17	6	0	9	0	2	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	1/0	a0003	1152	11	2	3	0	0	5	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	a0004	1152	4	4	0	0	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	a0005	1152	2	2	0	0	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	a0006	1152	2	0	0	2	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	a0007	1152	2	0	2	0	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	a0008	1152	2	0	1	0	0	1	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	a0009	1152	1	0	1	0	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	a0010	1150	1	0	1	0	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	a0011	1152	1	1	0	0	0	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	a0012	1152	1	0	0	0	1	0	copy fasta	BAIAP3	chr16	1328645	1354439
BAIAP3_chr16_1328645_1354439	0/0	a0013	1152	1	0	0	1	0	0	copy fasta	BAIAP3	chr16	1328645	1354439