JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SPTLC3_chr20_13003972_13174103	0/0	a0007	552	1	0	0	0	0	1	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	a0008	552	1	0	0	1	0	0	copy fasta	SPTLC3	chr20	13003972	13174103
SPTSSA_chr14_34427788_34467240	1/1	a0001	71	344	90	62	142	8	40	copy fasta	SPTSSA	chr14	34427788	34467240
SPTSSB_chr3_161339798_161376517	1/1	a0001	76	412	94	74	182	14	46	copy fasta	SPTSSB	chr3	161339798	161376517
SPTY2D1_chr11_18601403_18639342	1/1	a0001	685	360	86	67	154	16	35	copy fasta	SPTY2D1	chr11	18601403	18639342
SPTY2D1_chr11_18601403_18639342	0/0	a0002	685	63	0	6	50	1	6	copy fasta	SPTY2D1	chr11	18601403	18639342
SPTY2D1_chr11_18601403_18639342	0/0	a0003	685	10	6	3	0	0	1	copy fasta	SPTY2D1	chr11	18601403	18639342
SPTY2D1_chr11_18601403_18639342	0/0	a0004	684	3	0	1	0	1	1	copy fasta	SPTY2D1	chr11	18601403	18639342
SPTY2D1_chr11_18601403_18639342	0/0	a0005	685	2	0	0	2	0	0	copy fasta	SPTY2D1	chr11	18601403	18639342
SPTY2D1_chr11_18601403_18639342	0/0	a0006	685	2	2	0	0	0	0	copy fasta	SPTY2D1	chr11	18601403	18639342
SPTY2D1_chr11_18601403_18639342	0/0	a0007	685	1	0	1	0	0	0	copy fasta	SPTY2D1	chr11	18601403	18639342
SPTY2D1_chr11_18601403_18639342	0/0	a0008	685	1	0	0	0	0	1	copy fasta	SPTY2D1	chr11	18601403	18639342
SPTY2D1_chr11_18601403_18639342	0/0	a0009	685	1	0	0	1	0	0	copy fasta	SPTY2D1	chr11	18601403	18639342
SPTY2D1_chr11_18601403_18639342	0/0	a0010	685	1	0	0	1	0	0	copy fasta	SPTY2D1	chr11	18601403	18639342
SPX_chr12_21521296_21537947	1/1	a0001	116	427	93	76	198	16	42	copy fasta	SPX	chr12	21521296	21537947
SPX_chr12_21521296_21537947	0/0	a0002	116	1	1	0	0	0	0	copy fasta	SPX	chr12	21521296	21537947
SPZ1_chr5_80315002_80326842	0/1	a0001	430	326	62	42	184	9	28	copy fasta	SPZ1	chr5	80315002	80326842
SPZ1_chr5_80315002_80326842	1/0	a0002	430	65	12	30	14	4	4	copy fasta	SPZ1	chr5	80315002	80326842
SPZ1_chr5_80315002_80326842	0/0	a0003	430	18	7	5	0	1	5	copy fasta	SPZ1	chr5	80315002	80326842
SPZ1_chr5_80315002_80326842	0/0	a0004	430	6	0	3	0	1	2	copy fasta	SPZ1	chr5	80315002	80326842
SPZ1_chr5_80315002_80326842	0/0	a0005	430	3	3	0	0	0	0	copy fasta	SPZ1	chr5	80315002	80326842
SPZ1_chr5_80315002_80326842	0/0	a0006	430	3	0	0	3	0	0	copy fasta	SPZ1	chr5	80315002	80326842
SPZ1_chr5_80315002_80326842	0/0	a0007	430	3	1	1	0	1	0	copy fasta	SPZ1	chr5	80315002	80326842
SPZ1_chr5_80315002_80326842	0/0	a0008	430	2	0	2	0	0	0	copy fasta	SPZ1	chr5	80315002	80326842
SPZ1_chr5_80315002_80326842	0/0	a0009	430	2	2	0	0	0	0	copy fasta	SPZ1	chr5	80315002	80326842
SPZ1_chr5_80315002_80326842	0/0	a0010	430	2	2	0	0	0	0	copy fasta	SPZ1	chr5	80315002	80326842
SPZ1_chr5_80315002_80326842	0/0	a0011	430	1	0	0	0	0	1	copy fasta	SPZ1	chr5	80315002	80326842
SPZ1_chr5_80315002_80326842	0/0	a0012	430	1	1	0	0	0	0	copy fasta	SPZ1	chr5	80315002	80326842
SPZ1_chr5_80315002_80326842	0/0	a0013	430	1	0	0	1	0	0	copy fasta	SPZ1	chr5	80315002	80326842
SPZ1_chr5_80315002_80326842	0/0	a0014	430	1	0	1	0	0	0	copy fasta	SPZ1	chr5	80315002	80326842
SQLE_chr8_124993505_125027283	1/1	a0001	574	372	93	64	163	14	36	copy fasta	SQLE	chr8	124993505	125027283
SQLE_chr8_124993505_125027283	0/0	a0002	574	1	0	0	1	0	0	copy fasta	SQLE	chr8	124993505	125027283
SQLE_chr8_124993505_125027283	0/0	a0003	574	1	0	0	1	0	0	copy fasta	SQLE	chr8	124993505	125027283
SQLE_chr8_124993505_125027283	0/0	a0004	574	1	0	0	1	0	0	copy fasta	SQLE	chr8	124993505	125027283
SQLE_chr8_124993505_125027283	0/0	a0005	574	1	1	0	0	0	0	copy fasta	SQLE	chr8	124993505	125027283
SQLE_chr8_124993505_125027283	0/0	a0006	574	1	0	0	0	0	1	copy fasta	SQLE	chr8	124993505	125027283
SQLE_chr8_124993505_125027283	0/0	a0007	574	1	0	0	0	0	1	copy fasta	SQLE	chr8	124993505	125027283
SQOR_chr15_45630029_45696281	1/1	a0001	450	234	66	43	87	8	28	copy fasta	SQOR	chr15	45630029	45696281
SQOR_chr15_45630029_45696281	0/0	a0002	450	90	5	16	57	2	10	copy fasta	SQOR	chr15	45630029	45696281
SQOR_chr15_45630029_45696281	0/0	a0003	450	4	0	0	4	0	0	copy fasta	SQOR	chr15	45630029	45696281
SQOR_chr15_45630029_45696281	0/0	a0004	450	3	3	0	0	0	0	copy fasta	SQOR	chr15	45630029	45696281
SQOR_chr15_45630029_45696281	0/0	a0005	450	3	2	1	0	0	0	copy fasta	SQOR	chr15	45630029	45696281
SQOR_chr15_45630029_45696281	0/0	a0006	450	1	0	0	1	0	0	copy fasta	SQOR	chr15	45630029	45696281
SQOR_chr15_45630029_45696281	0/0	a0007	450	1	0	0	1	0	0	copy fasta	SQOR	chr15	45630029	45696281
SQOR_chr15_45630029_45696281	0/0	a0008	450	1	1	0	0	0	0	copy fasta	SQOR	chr15	45630029	45696281
SQOR_chr15_45630029_45696281	0/0	a0009	450	1	0	0	1	0	0	copy fasta	SQOR	chr15	45630029	45696281
SQOR_chr15_45630029_45696281	0/0	a0010	450	1	1	0	0	0	0	copy fasta	SQOR	chr15	45630029	45696281
SQOR_chr15_45630029_45696281	0/0	a0011	450	1	0	0	1	0	0	copy fasta	SQOR	chr15	45630029	45696281
SQSTM1_chr5_179815905_179843078	1/1	a0001	440	446	89	82	205	18	50	copy fasta	SQSTM1	chr5	179815905	179843078
SQSTM1_chr5_179815905_179843078	0/0	a0002	440	6	6	0	0	0	0	copy fasta	SQSTM1	chr5	179815905	179843078